UFO10054.5prime Sequence
1107 bp (930 high quality bases) assembled on 2011-10-19
> UFO10054.5prime
CAGTCGACATGATGGAACTTTTGTCAAACAATTCGGTTCCGCAACAAATG
GCCAGCAGCAATGCGCCGAGCGCCAACAATGTGGCCCACTCCTCAACGGC
CAACGGAAGTGGAGGCGGCAGTGTGAGCAGCAATGCCAGCAACTCCTCCG
AGCGACTGCTGGCGGGCATCCTGGAGAGCTTTCCCGCCTGGGACCTCAAC
GTGGGACTACTGCCCAACGTGGGCCAGAGCTCACCACCACGCGCAGACTT
CTTTATCAATAACTTCCTGGGCGGCCTGGACACGCATGGCGACTTCAGCA
TTGGACCCATTGGCAGCGGTGCCCGCAGCAATCCGAAGATGTCGCCAGAG
TCATCTAACAACTCGAGCATCAGCTGCGGTTGGTGCGAGGTTAGTGCTTC
AATACGCTGCCTGGAGTGCAACGAGTTCATGTGCAACGACTGCCTAAGGG
AGCATCGCAACAGTCCGCTGTCCTCCAACCACTCGATCGTGTCCTTGCCC
ACGCCCATTGGAGCCTCGCCCACGGGTGGCAGCTCGGTAAATGCACAGAC
TCCGCCCAGCGGCAACTTTATCTGCGACATACACAACGAGATTTTGCGCT
ACGTATGTGACTACTGCCGGAAATTGGTGTGTCAGTGCTGCACACTGCAC
GAGCACAAGGAGCACAGCTACGCGTCCATCCAAAGCTTTATGGTGGGCTC
GAAGGAGAAAGCTGGAGGGCGCCATTGAGAGCAGCCAGGTGGGCACGCGC
TGCATTAAGAGCAGCATTGACAAAGCGTTGGCCTTCATCCGGCTTATCGA
GCGCAATTGCAGCGAGCTGAGCGATAATATACGCAAGGCATTCCGTCAGT
TTTTCATTGCCATCGAGGACCGCGAGCGTTTCCTCATTGGAAGTTGGTGG
AAAGCTCCCGCCAGCGTCGTCCTGGCCATCCTACGCGATCAGATGGGAGG
CTTAAAGTCCTGCCCCTCGCCGGACTCCTCCGGAACCGTCCGAATATGCC
TAGTGAGGGGGGCGGGACCATGCCTGCCACATGGGACCAGAGTGAAATTT
GCCAATGAAGTGACCAATGGGCAAAAGGCCAATGGGAACAGTTGGCGGGC
ATATATA
UFO10054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wech-RE | 4316 | CG42396-RE | 300..1383 | 9..1107 | 4715 | 96.4 | Plus |
| wech-RD | 6021 | CG42396-RD | 224..1307 | 9..1107 | 4715 | 96.4 | Plus |
| wech-RC | 7593 | CG42396-RC | 554..1637 | 9..1107 | 4715 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7485090..7485817 | 959..228 | 3315 | 97.8 | Minus |
| 2R | 25286936 | 2R | 7485885..7486105 | 229..9 | 1105 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 577..663 | 861..774 | 122 | 64.4 | Minus |
UFO10054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:39 Download gff for
UFO10054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 338..1307 | 1..977 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:49 Download gff for
UFO10054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 547..1516 | 1..977 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:45 Download gff for
UFO10054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wech-RC | 547..1516 | 1..977 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:45 Download gff for
UFO10054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7485074..7485815 | 230..977 | 97 | <- | Minus |
| 2R | 7485885..7486112 | 1..229 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:49 Download gff for
UFO10054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3372579..3373320 | 230..977 | 97 | <- | Minus |
| arm_2R | 3373390..3373617 | 1..229 | 98 | | Minus |
