UFO10055.5prime Sequence
1077 bp (980 high quality bases) assembled on 2011-10-19
> UFO10055.5prime
CAGTCGACATGTTGCCCCCGTCCTGGCATCTAATTGGGGCCCTCCTAGTG
CTCGCGGCAACAGCGGGGGACTCCACCAACAAGATCATCTTGCCGCAGAT
TCTAAACGGTGGCGGTGGCGGCGGGGGCGTCGGAACTGCCCAGGGCAAAC
ATCCGTCTGGATCCAAGACGGTGGCAACTGGAGTGGTTCCAAACTTCGGT
GGAGCAGCTGGCAATGGAGCGGGCGGAGGAGGACCTGTGGCTGGCAGCGG
AACCGGAAGCACCGTGGTCGGCAGCAATGGCGTGATTGTGGCCGGAGGCG
GGGCCAATGTGCCGACCTCGAATTTAAACATTGTCGTCGAAGAACCCGAA
TTTACTGAATACATCGAAAACGTAACTGTACCTGCTGGACGTAATGTTAA
ACTCGGTTGCTCCGTGAAAAATCTGGGCTCATATAAGGTCGCCTGGATGC
ACTTCGAGCAGTCCGCCATCCTGACCGTTCACAATCACGTGATCACGCGC
AATCCGCGCATCAGTGTCACGCACGACAAGCACGACAGGCACCGCACGTG
GTATTTGCACATAAACAATGTGCACGAGGAGGACCGGGGTCGATATATGT
GCCAGATCAATACGGTGACGGCCAAAACGCAGTTTGGCTACCTAAACGTT
GTCGTTCCCCCCAACATCGACGACTCACTGAGCTCCAGCGATGTGATTGT
GCGAGAGGGAGCCAACATTTCGCTGAGATGCCGGGCCAGCGGTAGTCCCA
GACCCATTATCAAATGGAAACGCGACGATAACTCCCGCATAGCCATCAAT
AAGAATCACATAGTGAACGAATGGGAGGGCGACACTCTCGAGATACTCGC
ATTTCCCGACTGGACATGGGCGCCTATCTGTGCATCGCCTCCAATGGGGT
TCCACCCACGTTTCCAAGCGCATCAAGTCAGCGTGACTTTCTCCGATGCT
GCTTATACCCATCAGTTGGTTGGTGCTCCGAGTCTCACGTCACCATCGAT
GCTCACAGAGCAATCCCACTTCTCTGAACTATTGGACACGTGGCGAGGGA
CATCTAACCCGATTCGCACAAGTCAAG
UFO10055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31708-RC | 3384 | CG31708-RC | 575..1655 | 9..1073 | 4950 | 98.1 | Plus |
| CG31708-RB | 3562 | CG31708-RB | 693..1773 | 9..1073 | 4950 | 98.1 | Plus |
| CG31708-RA | 3444 | CG31708-RA | 575..1655 | 9..1073 | 4950 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9066080..9066401 | 330..9 | 1610 | 100 | Minus |
| 2L | 23513712 | 2L | 9060710..9060928 | 654..436 | 1095 | 100 | Minus |
| 2L | 23513712 | 2L | 9059692..9059851 | 813..654 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 9062398..9062506 | 439..331 | 545 | 100 | Minus |
| 2L | 23513712 | 2L | 6391145..6391346 | 637..436 | 530 | 84.2 | Minus |
| 2L | 23513712 | 2L | 9059485..9059601 | 926..812 | 485 | 98.3 | Minus |
| 2L | 23513712 | 2L | 9055266..9055328 | 1073..1013 | 205 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:40:12 has no hits.
UFO10055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:39 Download gff for
UFO10055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31708-RC | 566..1657 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:54 Download gff for
UFO10055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31708-RA | 568..1659 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:49 Download gff for
UFO10055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31708-RA | 568..1659 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:49 Download gff for
UFO10055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9066080..9066406 | 1..330 | 98 | | Minus |
| 2L | 9060710..9060926 | 438..654 | 100 | <- | Minus |
| 2L | 9062400..9062506 | 331..437 | 100 | <- | Minus |
| 2L | 9059471..9059599 | 814..938 | 96 | <- | Minus |
| 2L | 9059692..9059850 | 655..813 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:54 Download gff for
UFO10055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9060710..9060926 | 438..654 | 100 | <- | Minus |
| arm_2L | 9062400..9062506 | 331..437 | 100 | <- | Minus |
| arm_2L | 9066080..9066406 | 1..330 | 98 | | Minus |
| arm_2L | 9059471..9059599 | 814..938 | 96 | <- | Minus |
| arm_2L | 9059692..9059850 | 655..813 | 100 | <- | Minus |
