UFO10056.5prime Sequence
1060 bp (956 high quality bases) assembled on 2011-10-19
> UFO10056.5prime
CAGTCGACATGGCCCAACCACAGCTGCTGCAAATCAAATTGTCACGTTTC
GATGCCCAACCCTGGGGATTCCGCCTTCAGGGGGGCACGGACTTCGCTCA
GCCCCTGCTGGTGCAAAAGGTGAACGCCGGCAGCTTGTCCGAGCAGGCTG
GCCTCCAGCCCGGCGATGCGGTGGTCAAGATCAATGACGTGGATGTCTTC
AATCTGCGTCACAAGGATGCCCAGGACATTGTGGTGCGCTCCGGCAACAA
CTTTGTCATCACAGTGCAGCGCGGTGGCTCCACCTGGCGCCCGCATGTGA
CACCGACTGGCAATGTGCCGCAGCCCAACTCGCCGTATCTGCAGACGGTG
ACGAAGACCTCTCTGGCTCACAAACAACAGGACAGCCAGCACATCGGCTG
TGGCTACAACAACGCGGCCCGTCCCTTCTCCAACGGCGGCGATGGCGGCG
TGAAGAGCATTGTCAATAAACAATACAACACCCCGGTTGGCATTTACAGC
GATGAATCTATTGCGGAAACACTCTCGGCCCAGGCGGAGGTTTTGGCTGG
CGGTGTGCTCGGCGTCAACTTCAAGAAGAACGAGAAGGAATACCAGGGCG
ATCGCTCCGAGGTTCTGAAGTTCCTGCGCGAGGAGGAGACCGGCCAGTCC
ACTCCAGAACCACACAGTCCCGCCAACTTCTACTGGACACAGAGCCACGC
AATCGGCGGCAACGAGCGACGCACTCCACTGCACCACCAGCACCAGCAGC
CTCAGCAGGATGAGCGGATTGGTGTACCATTGCAGTCAAATACACTGGCG
CCGGAGGCGACACACAGCCCAGCTTGCCGGTGGCCCCGAAGGATAACGAG
GAGCAGCCAGACAGGATCAGCAGTGCAGCTCGATCCGCGCATCATTGTGC
TGCCCATCTGCCCCGGCCTCAGGGCCCGAGTATAAGGCTGAAATGAAGCT
GCAGCCGCGCACTGGCCACGACCAGTTGACGACCACGTCATTGCCCCCAG
CGACATCCGCTGCAGCTGTGCCGCGTGGCATTGTTGCGTTCGTGCCCATC
AAGAAAGAAC
UFO10056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp52-RV | 3701 | CG37-RV | 206..1270 | 9..1053 | 4750 | 97.5 | Plus |
| Zasp52-RO | 1963 | CG37-RO | 206..1270 | 9..1053 | 4750 | 97.5 | Plus |
| Zasp52-RN | 4637 | CG37-RN | 206..1270 | 9..1053 | 4750 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15779340..15779661 | 969..655 | 1235 | 96.6 | Minus |
| 2R | 25286936 | 2R | 15783088..15783245 | 428..271 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 15783315..15783468 | 271..118 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 15781773..15781906 | 562..429 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 15803359..15803471 | 121..9 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 15780985..15781080 | 657..562 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:40:19 has no hits.
UFO10056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:40 Download gff for
UFO10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RE | 229..1247 | 2..1009 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:58 Download gff for
UFO10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RN | 201..1219 | 2..1009 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:52 Download gff for
UFO10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RN | 201..1219 | 2..1009 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:52 Download gff for
UFO10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15781773..15781906 | 429..562 | 100 | <- | Minus |
| 2R | 15783088..15783244 | 272..428 | 100 | <- | Minus |
| 2R | 15783315..15783466 | 120..271 | 100 | <- | Minus |
| 2R | 15803361..15803476 | 2..119 | 96 | | Minus |
| 2R | 15779294..15779658 | 658..1009 | 95 | <- | Minus |
| 2R | 15780985..15781079 | 563..657 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:58 Download gff for
UFO10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11666799..11667163 | 658..1009 | 95 | <- | Minus |
| arm_2R | 11668490..11668584 | 563..657 | 100 | <- | Minus |
| arm_2R | 11669278..11669411 | 429..562 | 100 | <- | Minus |
| arm_2R | 11670593..11670749 | 272..428 | 100 | <- | Minus |
| arm_2R | 11670820..11670971 | 120..271 | 100 | <- | Minus |
| arm_2R | 11690866..11690981 | 2..119 | 96 | | Minus |
