UFO10058.5prime Sequence
985 bp (570 high quality bases) assembled on 2011-10-19
> UFO10058.5prime
CAATCGACATGCGGGCGGTGCGCCGGGCGAATGCAACTGGTTCCTTCTCC
TGGATCGGATCCGATGGCTGGAGTGCCCGGAATTTGGTGTCCGACGACTA
CTACCCGGAGGTGGAAGGCACGCTGTCTGTGCAGCCGCAGGCGAATCCGG
TGCGCGGGTTCGAGGAGTACTTCCTCATTCTGACGGTGGATAACAATCAA
CGCAATCCCTGGTTTGTGGAATTCTGGGAGGATCACTTTCAGTGCCGATA
TCCCGGCAGTACGAGCACTCCGTACAATAACTACACCAAACAGTGCACCA
CAAAGGAGCGACTTTCACGCCAGAACACTGACTTCGAGGACCAGTTGCAG
TTTGTCAGCGATGCGGTGATGGCATTTGCATACGCCCTAAGGGATATGCA
CCGCGACCTGTGCGGCGGAGGTCCTTCTCTCTGCGAGGCCATGAAGCCAA
CGAAGGGTGCAAACTTGCTGAAATATTTGCGAAAAGTGGAGTTTGAGGGC
CTCAGCGGCGACGAGTTCCGCTTCCACGGGAACGGCGACGGTCCCGCCCG
GTACAACATCATCCACTTCAAGCTGTCCCAGGCGGGACAGTACCACTGGG
TCAAGGTGGGCGAGTACACCGAGGGCGAGCTGCGGCTTAATATGACGGAG
GTGAAGTTTAAGCGGCTGAGTCCCAAGCCGCCGGAGTCTGTCTGCATCCT
GCCATGTCTTGTGGGTCTGCCAAAAATACGTGAAATGCGAGAGCTGCTGT
TGGCACTGCTTCAATTGCACAACTATCAATCCGTCTCCCGGATGACGAGA
CCCTTGCAAGCTGTGCAAGCTGCGCACTCTTCCCGACGACCACAATCAGT
ACTGCCGCCCCATCCCTGAAAATTATTTGCGTCCAGGAGTCGGCTTGGGC
CATCGGTGCATTGGCGATCAATGCGTCTGGTATCTTGATACCCTCTTTTG
AAATGGCCGAAATTTGTCAGGCACACTAACACGCC
UFO10058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtt-RG | 7328 | CG30361-RG | 3527..4506 | 9..985 | 4090 | 95 | Plus |
| mtt-RF | 5422 | CG30361-RF | 1621..2600 | 9..985 | 4090 | 95 | Plus |
| mtt-RE | 6368 | CG30361-RE | 2567..3546 | 9..985 | 4090 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8482855..8483028 | 392..219 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 8481948..8482098 | 648..498 | 725 | 98.7 | Minus |
| 2R | 25286936 | 2R | 8482605..8482718 | 499..386 | 525 | 97.4 | Minus |
| 2R | 25286936 | 2R | 8483132..8483242 | 219..109 | 525 | 98.2 | Minus |
| 2R | 25286936 | 2R | 8483601..8483704 | 112..9 | 490 | 98.1 | Minus |
| 2R | 25286936 | 2R | 8481651..8481778 | 773..648 | 470 | 93 | Minus |
| 2R | 25286936 | 2R | 8481250..8481407 | 936..779 | 440 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:39:28 has no hits.
UFO10058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:35 Download gff for
UFO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtt-RE | 2182..3092 | 1..909 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:25 Download gff for
UFO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtt-RE | 2561..3471 | 1..909 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:27 Download gff for
UFO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtt-RE | 2561..3471 | 1..909 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:27 Download gff for
UFO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8482856..8483027 | 220..391 | 100 | <- | Minus |
| 2R | 8483132..8483240 | 111..219 | 98 | <- | Minus |
| 2R | 8483603..8483710 | 1..110 | 94 | | Minus |
| 2R | 8481644..8481777 | 649..778 | 93 | <- | Minus |
| 2R | 8481948..8482097 | 499..648 | 98 | <- | Minus |
| 2R | 8482606..8482712 | 392..498 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:25 Download gff for
UFO10058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4370361..4370532 | 220..391 | 100 | <- | Minus |
| arm_2R | 4370637..4370745 | 111..219 | 98 | <- | Minus |
| arm_2R | 4371108..4371215 | 1..110 | 94 | | Minus |
| arm_2R | 4369149..4369282 | 649..778 | 93 | <- | Minus |
| arm_2R | 4369453..4369602 | 499..648 | 98 | <- | Minus |
| arm_2R | 4370111..4370217 | 392..498 | 98 | <- | Minus |
