Clone UFO10060 Report

Search the DGRC for UFO10060

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:100
Well:60
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptesn-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10060.5prime Sequence

1033 bp (943 high quality bases) assembled on 2011-10-19

> UFO10060.5prime
CAGTCGACATGCAGCAGGCCCCGCAGCAGCAGCAGCATCCCCATCCGCCC
AGCAGCAGCTACTACACGCAAACCGAAAGCGAGCTGCTGCAGATTGAGGC
GGGCGGCACGGGCCTGACCTTCGCCTCCCACTCGCAACGTCCCGAATCGG
CGATCAGTCAGGTGGCATCCACCGCCCACCTGGACGTGCCCTCGGCCGCC
TCCAGCGGCAGCGGGGGCAGTGCAGTCAGTGGGGGAAGCGGCGGAGCTCC
GGAATCCGCGGGTCGATTTGTGTCCCCGCTGCAGCGCCGCCACTGCCAGC
CGCCCAGCCACCTGCCGCTGAACTCGGTGGCCTCCCCGCTCCGCACCGCC
AGCTACAAGTCGGCGGCGGCGGTCGCTGGTCATGGCTTCCACCACAGCCA
TCACCAGCAGCTGGACTTCCAGCGGAACTCGCAGTCGGACGACGACAGCG
GCTGTGCCCTCGAGGAGTACACTTGGGTGCCGCCGGGTCTGCGGCCCGAT
CAGGTCCGTTTGTACTTCAGTCAACTGCCAGACGACAAAGTGCCCTACGT
CAACAGTGCCGGCGAAAAGTATCGTGTCAAGCAGTTGCTGCACCAGCTGC
CGCCGCAAGATAACGAAGTGCGCTACTGCCACTCGCTGAGCGACGAGGAG
CGCAAGGAGCTGCGCATCTTCTCGGCCCAAAGGAAGCGGGAGGCCCTCGG
ACGAGGGGCGGTCCGTCTGCTGTCCGACGAGCGGCCCTGCAAGGGGTGCG
AGGAGCCTTTGTCCGGCGGTGACATCGTGGTTTTCGCCCAGCGCCTGGGC
GCCCAGTTGTGTTGGCATCCGGGCTGCTTTGTGTGCAGCGTCTGCAGAGC
TCCTGGTGGACCTCATCTACTTCCAGCGGGACGGGACCTCTACTGCGTCG
GCACCATGCCGAACCCAGAGCCACGCTGCTCGCTGCGATGAGATCAGCTT
CCTCGACGATGCACGAGCGGAGGCAGACCGTCCCAATGAGCACTCGCTGC
AAGATGCACACACTTGCCGCACGTACTCATGCG

UFO10060.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
esn-RD 3982 CG43722-RD 582..1568 7..981 4555 98.3 Plus
esn-RC 4708 CG43722-RC 1308..2294 7..981 4555 98.3 Plus
esn-RA 3982 CG43722-RA 582..1568 7..981 4555 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7118479..7118977 7..505 2495 100 Plus
2R 25286936 2R 7124987..7125158 746..913 695 97.7 Plus
2R 25286936 2R 7120524..7120652 618..746 645 100 Plus
2R 25286936 2R 7119803..7119922 501..620 585 99.2 Plus
2R 25286936 2R 7209477..7209570 412..505 275 86.2 Plus
2R 25286936 2R 7219052..7219171 501..620 210 78.3 Plus
Blast to na_te.dros performed on 2014-11-27 00:39:41 has no hits.

UFO10060.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:37 Download gff for UFO10060.5prime
Subject Subject Range Query Range Percent Splice Strand
esn-RA 576..1549 1..965 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:33 Download gff for UFO10060.5prime
Subject Subject Range Query Range Percent Splice Strand
esn-RA 576..1549 1..965 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:32 Download gff for UFO10060.5prime
Subject Subject Range Query Range Percent Splice Strand
esn-RA 576..1549 1..965 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:32 Download gff for UFO10060.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7118473..7118975 1..503 99 -> Plus
2R 7119806..7119919 504..617 99 -> Plus
2R 7120524..7120652 618..746 100 -> Plus
2R 7124988..7125199 747..951 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:33 Download gff for UFO10060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3005978..3006480 1..503 99 -> Plus
arm_2R 3007311..3007424 504..617 99 -> Plus
arm_2R 3008029..3008157 618..746 100 -> Plus
arm_2R 3012493..3012704 747..951 94   Plus