UFO10060.5prime Sequence
1033 bp (943 high quality bases) assembled on 2011-10-19
> UFO10060.5prime
CAGTCGACATGCAGCAGGCCCCGCAGCAGCAGCAGCATCCCCATCCGCCC
AGCAGCAGCTACTACACGCAAACCGAAAGCGAGCTGCTGCAGATTGAGGC
GGGCGGCACGGGCCTGACCTTCGCCTCCCACTCGCAACGTCCCGAATCGG
CGATCAGTCAGGTGGCATCCACCGCCCACCTGGACGTGCCCTCGGCCGCC
TCCAGCGGCAGCGGGGGCAGTGCAGTCAGTGGGGGAAGCGGCGGAGCTCC
GGAATCCGCGGGTCGATTTGTGTCCCCGCTGCAGCGCCGCCACTGCCAGC
CGCCCAGCCACCTGCCGCTGAACTCGGTGGCCTCCCCGCTCCGCACCGCC
AGCTACAAGTCGGCGGCGGCGGTCGCTGGTCATGGCTTCCACCACAGCCA
TCACCAGCAGCTGGACTTCCAGCGGAACTCGCAGTCGGACGACGACAGCG
GCTGTGCCCTCGAGGAGTACACTTGGGTGCCGCCGGGTCTGCGGCCCGAT
CAGGTCCGTTTGTACTTCAGTCAACTGCCAGACGACAAAGTGCCCTACGT
CAACAGTGCCGGCGAAAAGTATCGTGTCAAGCAGTTGCTGCACCAGCTGC
CGCCGCAAGATAACGAAGTGCGCTACTGCCACTCGCTGAGCGACGAGGAG
CGCAAGGAGCTGCGCATCTTCTCGGCCCAAAGGAAGCGGGAGGCCCTCGG
ACGAGGGGCGGTCCGTCTGCTGTCCGACGAGCGGCCCTGCAAGGGGTGCG
AGGAGCCTTTGTCCGGCGGTGACATCGTGGTTTTCGCCCAGCGCCTGGGC
GCCCAGTTGTGTTGGCATCCGGGCTGCTTTGTGTGCAGCGTCTGCAGAGC
TCCTGGTGGACCTCATCTACTTCCAGCGGGACGGGACCTCTACTGCGTCG
GCACCATGCCGAACCCAGAGCCACGCTGCTCGCTGCGATGAGATCAGCTT
CCTCGACGATGCACGAGCGGAGGCAGACCGTCCCAATGAGCACTCGCTGC
AAGATGCACACACTTGCCGCACGTACTCATGCG
UFO10060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esn-RD | 3982 | CG43722-RD | 582..1568 | 7..981 | 4555 | 98.3 | Plus |
esn-RC | 4708 | CG43722-RC | 1308..2294 | 7..981 | 4555 | 98.3 | Plus |
esn-RA | 3982 | CG43722-RA | 582..1568 | 7..981 | 4555 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7118479..7118977 | 7..505 | 2495 | 100 | Plus |
2R | 25286936 | 2R | 7124987..7125158 | 746..913 | 695 | 97.7 | Plus |
2R | 25286936 | 2R | 7120524..7120652 | 618..746 | 645 | 100 | Plus |
2R | 25286936 | 2R | 7119803..7119922 | 501..620 | 585 | 99.2 | Plus |
2R | 25286936 | 2R | 7209477..7209570 | 412..505 | 275 | 86.2 | Plus |
2R | 25286936 | 2R | 7219052..7219171 | 501..620 | 210 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:39:41 has no hits.
UFO10060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:37 Download gff for
UFO10060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esn-RA | 576..1549 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:33 Download gff for
UFO10060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esn-RA | 576..1549 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:32 Download gff for
UFO10060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esn-RA | 576..1549 | 1..965 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:32 Download gff for
UFO10060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7118473..7118975 | 1..503 | 99 | -> | Plus |
2R | 7119806..7119919 | 504..617 | 99 | -> | Plus |
2R | 7120524..7120652 | 618..746 | 100 | -> | Plus |
2R | 7124988..7125199 | 747..951 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:33 Download gff for
UFO10060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3005978..3006480 | 1..503 | 99 | -> | Plus |
arm_2R | 3007311..3007424 | 504..617 | 99 | -> | Plus |
arm_2R | 3008029..3008157 | 618..746 | 100 | -> | Plus |
arm_2R | 3012493..3012704 | 747..951 | 94 | | Plus |