UFO10062.5prime Sequence
1089 bp (990 high quality bases) assembled on 2011-10-19
> UFO10062.5prime
CAGTCGACATGTTGGATCGATGCGAAATGCCGATCCAGCTGGACAACGAG
AAGTTGCGGCGGGATGTTCGATTGTCGGGCTCTCGACTTGATTTGCCACA
ACTCTGTAATGGATCCCGTCGGTTGGATGGCCACAACAACCATGTGGCTG
CCAATGAGAACACGGTTACAACGACATCCCTGAATGGAAATGGCAACGGC
AATGGCAATAGCAATAGCAACAACAACAACAACATCGGATCGCCCGTCTC
CTCATCGACAACAAACAGCAGTAATGGCGGCAACGAGCGCGGCTCCTCCA
CAAAGTCCAATAGCAGCAGTGGAAGTGGCAGCTCGGGAAACTCGGCCAGC
AGCACGGGAAGTGGCGAGCTCAAATGCAATACGCCCATGACGCCATCTGA
GCTGGTGAAGAAGTTCCGCAACTACCTAACCGATCTTGAGTTCGAAGAGC
TCAAGGTGTACAAGGAAGTGTGGTATTTTGGCCAGCACGCCAGCAAGAAC
TACAACAAACCCGCCCCCACAGCCAATACCACAAATCTGGGCTATGACGA
TGATAATGGCAACTACAAGATCATCGAACACGATCACATAGCTTTTCGTT
ACGAGATTCTGGAGGTAATTGGCAAGGGCAGTTTTGGCCAGGTCATCAGG
GCGCTGGATCACAAGACCAACACACACGTGGCCATCAAGATCATAAGGAA
CAAGAAGCGCTTCCTCAACCAGGCCGTCGTCGAACTGAATATCCTCGATG
AGCTGCGCGAAAAGGACGCGGATGGATCTCATAATGTCATACACATGCTC
GACTATACATATTTCCGCAAGCATTTGTGTATTACTTTTGAGCTAATGAG
CTTGAACCTGTACGAATTGATAAGAGAACAACTACAATGGAATCAGCATG
AGTCTCATACGACGCTTCTGTGACTCGATTGGTAAGTGCCTGCGTTTGCT
CTATAAGAAAACATTATTCACTGTGATCTCAAGCCGGAAAAATATCTTGC
TCAAACAGCGTGTAGCAGCTCATAAGGTATCGAAGTTTGGCAGCCTCATG
CTACGGTGATCGCAAAATCTATACGTTACATTCATCGAA
UFO10062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyrk2-RF | 4663 | CG4551-RF | 835..1906 | 9..1076 | 5000 | 98.2 | Plus |
| Dyrk2-RE | 4590 | CG4551-RE | 762..1833 | 9..1076 | 5000 | 98.2 | Plus |
| Dyrk2-RD | 4417 | CG4551-RD | 589..1660 | 9..1076 | 5000 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14196927..14197299 | 399..27 | 1850 | 99.7 | Minus |
| 2L | 23513712 | 2L | 14195733..14196010 | 850..573 | 1390 | 100 | Minus |
| 2L | 23513712 | 2L | 14196075..14196248 | 572..399 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 14189094..14189235 | 987..849 | 505 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:40:26 has no hits.
UFO10062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:41 Download gff for
UFO10062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smi35A-RA | 746..1840 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:02 Download gff for
UFO10062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smi35A-RD | 578..1672 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:55 Download gff for
UFO10062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyrk2-RD | 578..1672 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:55 Download gff for
UFO10062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14189095..14189233 | 851..986 | 94 | <- | Minus |
| 2L | 14195733..14196010 | 573..850 | 100 | <- | Minus |
| 2L | 14196075..14196247 | 400..572 | 100 | <- | Minus |
| 2L | 14196927..14197293 | 33..399 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:02 Download gff for
UFO10062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14189095..14189233 | 851..986 | 94 | <- | Minus |
| arm_2L | 14195733..14196010 | 573..850 | 100 | <- | Minus |
| arm_2L | 14196075..14196247 | 400..572 | 100 | <- | Minus |
| arm_2L | 14196927..14197293 | 33..399 | 100 | <- | Minus |
