UFO10063.5prime Sequence
1088 bp (940 high quality bases) assembled on 2011-10-19
> UFO10063.5prime
CAGTCGACATGTTATCCAATCGGGCGTTTGGAGAAACAATTGAGGACTAT
GAAGTACAGCACTTGCTGGGTAAAGGTGGTTTTGCGACCGTCTACAAGGC
GCGGTGCCTGCACACTCACCAGGATGTGGCCATAAAGATGATCGATAAAA
AACTAATCCAGGGCACTGGACTCACTAACCGCGTTCGCCAGGAAGTGGAA
ATCCACTCCCGCCTGAAGCATCCCTCTGTGCTTCAGCTGTACACTTTCTT
TCAGGACGCCAACTATGTGTATTTGGTGCTCGAGCTGGCCCATAATGGGG
AGCTTCATCGCTATATGAACCACATCGCCAGACCCTTCACAGAGACGGAA
GCTGCTTCCATTCTGAAGCAGGTGGTGGCGGGACTTTTGTACCTGCACTC
CCACAACATCATGCACCGCGACATTTCGCTGTCCAACCTACTGCTTAGCA
GGGAAATGCACGTCAAGATAGCCGATTTTGGACTGGCCACCCAATTAAAG
CGACCTGATGAGCGCCATATGACCATGTGTGGAACTCCGAACTATATTTC
GCCTGAGGTGGTATCGCGAACGTCTCACGGACTGCCCGCGGACGTCTGGA
GCGTTGGATGCATGCTGTACACCCTGCTGGTTGGACGCCCGCCCTTCGAA
ACCGATGCAGTGCAGTCAACCCTTAACAAAGTTGTGATGTCCGAGTACAT
TATGCCGGCTCACTTGTCTTACGAGGCGCAGACCTGATAAACAAATTATT
AAAAAAGCTCCCGCACGAACGAATTACCCTGGAGGCTGTTCTCTGCCATC
CCTTTATGTTGAAATGCTCAAATGGTGGACACTCTGCGCCGGGAGCGTTG
AATGTGTTCAGCCAGAGTATGGGAAAGTGGCGATAGTGGATCATACATTT
GGCTAGCAGTGACTCCCGGAATTCCCAGCAAATTCGATCTGTGTGACTGC
AGACCACACAGTGCTTCCTCAATACGGAGATTTAGCCAGTCCATCTAATT
GCCTTATGAACAGACTGTTTAATTGGCAAGCTTCACTGCTTGCGGTATTG
GCCAGAGACCTGCTAGTCCCTCACCGTTCCGCATGGAA
UFO10063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SAK-RA | 3371 | CG7186-RA | 137..1177 | 9..1035 | 4665 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21514758..21515508 | 890..140 | 3660 | 99.7 | Minus |
| 3L | 28110227 | 3L | 21515561..21515658 | 140..43 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 21515715..21515751 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:40:32 has no hits.
UFO10063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:41 Download gff for
UFO10063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SAK-RA | 134..1178 | 9..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:07 Download gff for
UFO10063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SAK-RA | 137..1181 | 9..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:59 Download gff for
UFO10063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SAK-RA | 137..1181 | 9..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:59 Download gff for
UFO10063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21514739..21515507 | 141..908 | 99 | <- | Minus |
| 3L | 21515561..21515656 | 45..140 | 100 | <- | Minus |
| 3L | 21515716..21515751 | 9..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:07 Download gff for
UFO10063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21507839..21508607 | 141..908 | 99 | <- | Minus |
| arm_3L | 21508661..21508756 | 45..140 | 100 | <- | Minus |
| arm_3L | 21508816..21508851 | 9..44 | 100 | | Minus |
