UFO10065.5prime Sequence
1084 bp (972 high quality bases) assembled on 2011-10-19
> UFO10065.5prime
CAGTCGACATGGTTGCCTGGCTGACGGTTAAGTCAGTGGCCATCTTTTTG
GGCCTGGCCTCTACTGCTTTTTGTGTGGCCACGATTGTGCTGGCCGTTCA
GAATGCGGACCTGGAGAACGATCTGCAGGATGCCCTCGATAAGATCGACG
CATTGACGGTGGACACCACGTCCACGTCCTCCACCTCTACCAGCACTTCC
ACGACCACCACCACTGCAAATCCCAATGGGCCCACGGATGACACCGAGCC
TGGCTCTACCACCACACCTGGCGTAGGAGGTGACACAACCCCCAGTGCAG
GAACATCTCCGGGTGGTGAAACTTCGCCATCATCCAGTACAGGAAGCACC
ACCAATCCCATCTATCCGACATTGCCGACAGGACTTCCTGATCCTGAAAA
GATCGAATGGCGCCTGCCCACGGAACTGACGCCCATCAAGTACAAGGTGT
ACTACCATCCCGACTTGACGACCGGCGCCTGTGAGGGAACCGTGTCCATT
CAGTTCCAGCTGAACGCGATCACCAACCTGATCGTCCTGCACGCCAAGGA
GCTCAATGTGCACAGCATCAGCATCCTGAACATGATGGCGCGCATACGCG
TGGCCATCGATAGCATCAACTTGGATGAGTCCCGGGAGCTGCTCCTGATC
ACGCTAAGAGAGGTCCTCAGTATGAACAAGGCCTACACACTGTCCGCAAG
TTTCGACTGCGATCTGAGCAGTCTGGTGGGCAGCTACATCAGCAACTACA
CGAATGCCGATGGAGTAGATAGATCAATCATTTCCACAAAGTTTGAGCCC
ACTTATGCCCGCCAAGCATTCCCCTGCTTCGATGAGCCCGCCCTTTACGC
TCAGTTCACCATAACGTGGCCCGTCCAAGTGGTGATGAGTACCATGTGCT
GTCCAACATGCCAGTGGCCAGCGAGTATGTCGATGGCGATATCAACGAGG
TGACTTTCGCGGAGAACCGTACCATGAGCACCTATCTGCCGCTTTGGTGT
GTCTGATTTCAATACCAGAAACACTGTGGAGGAACCAGCATCGCTCTGAA
GGTCTAATGCCCACCAGGCAGGTGGAGAATACCC
UFO10065.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-RA | 3273 | CG32473-RA | 78..1161 | 9..1084 | 5010 | 98.2 | Plus |
| CG32473-RB | 3002 | CG32473-RB | 569..890 | 771..1084 | 1200 | 93.8 | Plus |
| CG32473-RC | 3635 | CG32473-RC | 1202..1523 | 771..1084 | 1200 | 93.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13302798..13303180 | 19..401 | 1915 | 100 | Plus |
| 3R | 32079331 | 3R | 13304124..13304496 | 400..772 | 1865 | 100 | Plus |
| 3R | 32079331 | 3R | 13310144..13310465 | 771..1084 | 980 | 91.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:40:45 has no hits.
UFO10065.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:43 Download gff for
UFO10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RA | 73..1156 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:18 Download gff for
UFO10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RA | 78..1161 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:07 Download gff for
UFO10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RA | 78..1161 | 9..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:07 Download gff for
UFO10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13302798..13303180 | 19..401 | 100 | -> | Plus |
| 3R | 13304126..13304496 | 402..772 | 100 | -> | Plus |
| 3R | 13310146..13310465 | 773..1084 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:18 Download gff for
UFO10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9128520..9128902 | 19..401 | 100 | -> | Plus |
| arm_3R | 9135868..9136187 | 773..1084 | 93 | | Plus |
| arm_3R | 9129848..9130218 | 402..772 | 100 | -> | Plus |
