UFO10070.5prime Sequence
1115 bp (992 high quality bases) assembled on 2011-10-19
> UFO10070.5prime
CAGTCGACATGACTTCCCTCGTGTACACCGTCTTTCACCTGGCCTCGCTG
CAATGTTCCGTGCGTCCGGAGATCTCGCCCTGCACCTGCGAAACGGGCAA
AGCCTGGAATCATGTGGAGCTCTCCTGCGAGAAGTTGGAATCCTTCAACG
CCGTCGTGGACAGCCTGGCCAATAAGCTCAATGCCGACACCAATATCGAC
CTAAAGATCACGCACTCGCAACTCGACGACCTGGAAATGCGCTCGTTTAC
GGATATGAACTTCAACTTGTACAAGCTACGGATGCAGTGGAACAGTCTAA
AATCGCTGCCCGAGGTGCCGTTCCGCGGGTTATCGAATGTCACCTACCTA
AGCATCGGCGACAACGACCTCGACGAGATCCCGAAGCACGCCCTGAGCCA
CATGCCGAGCCTTTTGACTCTGGACATTGGGCGGTGCAAGATACGGGCGG
TGCAGCAGGAGGACTTCCGGGGCATACAGCGGGTAACGAATCTGATTCTG
GTGAGCAACATCATTACGCGCCTGGACCGAGGATCCTTTCCCAAGAGCCT
CCTCATCCTGCATCTGGGTAGAAACCAACTGGAGTCGCTGAATGGCTCGC
TTCACGATCTGCACAACTTGGAGTCTCTGTTCATCAATGCGAATAATATC
ACATCGCTGGATGATGAGCTACCCGATGGAGGGCAGTTGCGCCTCCTGAT
GGCTCACAATAATAGGTTGGAACGCCTGCCGGCCAATATGGCCGGTATGC
ACAGCCTGTAGACGGTCCACATACACTGCAACCAGCTGAGATCCTTCGAC
CGTGTACTTCGCAATGCCGTCAATCTGTCCGAGGTCATGGCCGATAACAA
TGAGCTGGAGTACCTGGCCCAGGATGAATTCGCCTCCTGCTCCAAGTGAG
ACCCTGCAGATAGGCTGCAATCAACATCAAGTCGCTCAACTCCTCCGCTA
CTGCCCATCCTCAAGCTGAAGAATGCCAACTTCTCGTCAACGACATCGAA
AACTTCCTCCATGGGCGGAACTGCACGGATTGCGATCGCTGAAGAAACTC
CATGCTGTCCAGTTATCGCATCAACGACTGCCTGCCCGGATCAAGGAGGC
CAGGACCTGATGCCT
UFO10070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltl-RB | 4108 | CG32372-RB | 689..1766 | 9..1088 | 5080 | 98.5 | Plus |
| ltl-RA | 3622 | CG32372-RA | 203..1280 | 9..1088 | 5080 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7524487..7525255 | 302..1072 | 3400 | 98.1 | Plus |
| 3L | 28110227 | 3L | 7519685..7519977 | 9..301 | 1465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:31:55 has no hits.
UFO10070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:56 Download gff for
UFO10070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32372-RA | 198..1278 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:02 Download gff for
UFO10070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltl-RA | 203..1283 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:12 Download gff for
UFO10070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltl-RA | 203..1283 | 9..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:12 Download gff for
UFO10070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7519685..7519977 | 9..301 | 100 | -> | Plus |
| 3L | 7524487..7525274 | 302..1092 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:02 Download gff for
UFO10070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7512785..7513077 | 9..301 | 100 | -> | Plus |
| arm_3L | 7517587..7518374 | 302..1092 | 97 | | Plus |
