UFO10071.5prime Sequence
1107 bp (987 high quality bases) assembled on 2011-10-19
> UFO10071.5prime
CAGTCGACATGCGCCCGCAATCAGCTGCGTGTCTATTACTGGCCATCGTT
GGCTTCGTGGGAGCCACCGAGTGGTGGGAGAGTGGAAACTACTACCAGAT
CTACCCGCGCTCCTTCCGGGATTCCGACGGAGACGGCATTGGCGACCTGA
ACGGGGTCACTGAAAAGCTGCAGTACCTGAAAGACATCGGCTTCACGGGC
ACATGGCTGTCGCCCATATTCAAGTCGCCCATGGTCGACTTTGGTTACGA
CATATCGGACTTCTACCAGATCCATCCCGAATATGGAACCATGGAGGACT
TTGAGCGAATGATCGCCAAGGCCAAGGAGGTGGGCATTAAAATCATCCTG
GACTTCGTACCAAACCACTCAAGTACCGAAAACGAATGGTTCACCAAGTC
TGTGGACAGTGACCCCGTCTACAAAGACTTCTACATCTGGCACGATGGCA
AGATCAACAACGAGACCGGTGAGCGGGAGCCGCCGAGCAACTGGAACTCT
GAGTTTCGCTACAGCGCCTGGGAGTGGAACGAGGTGCGTCAGCAGTACTA
CCTCCACCAGTTCGCCTTCCAGCAGGCCGACCTCAACTATCGCAATCCGG
CCGTGGTTAACGAGATGAAGAACGTTATTCGCTTCTGGCTGGGAAAGGGA
GTATCCGGATTCCGTATAGATGCAGTTCCCTACTTGTTTGAGGTGGATCT
CGATCGCTACAACCAGTATCCGGACGAGCCTCTGACCAACGACTCCGTGA
ACTGTCCCGACCCCGATGACCACTGCTACACGCAGCACATCTATACACAG
GACATGCCGGAAACAATTGACATGGTGTACCAGTGGCGTGAGTTGGTGGA
TGAGTTTCATGTGAGAACGGCGGAGATAGAGCTGCTGATGACGAGCGTAC
ACCAGCTTTGAAAACATCATGACTTACTATGGAAATGGAGTCAGATGGCT
CCCACATTCCCTTCAACTTTGAAGTCTTACGAGCATCAACAACGCCCTCT
AAGCCGGAAAGTACGTTAGAACATATTTAGGAATGGATGACGCCATGCCG
AGGCGTTATGCATGGGGTGCTGGGCACACGGACACAGCGGTAGCTCCCGA
GTAGGTT
UFO10071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A1-RA | 1826 | CG8696-RA | 21..1101 | 9..1076 | 4890 | 97.7 | Plus |
| Mal-A8-RA | 1814 | CG8690-RA | 146..652 | 92..598 | 515 | 74.4 | Plus |
| Mal-A6-RC | 1892 | CG30360-RC | 163..687 | 96..620 | 425 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8450836..8451884 | 1049..9 | 4630 | 97.6 | Minus |
| 2R | 25286936 | 2R | 8472099..8472605 | 92..598 | 495 | 73.2 | Plus |
| 2R | 25286936 | 2R | 8465320..8465844 | 96..620 | 420 | 72 | Plus |
| 2R | 25286936 | 2R | 8458913..8459195 | 92..374 | 230 | 72.1 | Plus |
| 2R | 25286936 | 2R | 8471348..8471514 | 262..96 | 220 | 75.4 | Minus |
| 2R | 25286936 | 2R | 8471012..8471091 | 598..519 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:02 has no hits.
UFO10071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:56 Download gff for
UFO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpH-RA | 8..1112 | 1..1089 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:07 Download gff for
UFO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A1-RA | 13..1117 | 1..1089 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:16 Download gff for
UFO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A1-RA | 13..1117 | 1..1089 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:16 Download gff for
UFO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8450788..8451890 | 1..1089 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:07 Download gff for
UFO10071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4338293..4339395 | 1..1089 | 96 | | Minus |
