UFO10072.5prime Sequence
1073 bp (989 high quality bases) assembled on 2011-10-19
> UFO10072.5prime
CAGTCGACATGGTGGTTTGCGGGAACATTTTGGCCAGGAACAACTTCGAG
CACTTTGTTCTGGCGTGTGCTCACCAAAATGACTGCTACGTGGAGATGGA
GTTCAAGCGGTGGCGAGAGTTCATCGTGCACGTCAAGGAGCACCTGGAAG
CAAATCCAAGCATGCAGCAAGAGCTCACTACTTCCGAAGTCATTTCGTCA
GCCAAATGCGAGGAGGAGGTCTCGCCAGCCAAGGTGTTCATAGTGGAGGA
GCCTCCGGAAAATTGCCTGGCTGAAGACATGTTCGTTGACGTGCCACCTT
CATCAGAGAACGACGAGAGCACCAGCCCGGTGGAGGAGGAGGAGGAAGAA
GACGACGAGGTGGACTCCTCCTCGATGACAGTTGACTGCGAATTGGGCAC
CAGAAACTCCACACACTTTGCTCCTTTAACCAAATTCAATCCTACGTTTT
ACCGACGCAGTCCTCGGATCACACAGTTCATTGAACTGTATAAGCAGCAG
ACATGCCTCTGGGATCCAGCGGATGAGTCGTACAGGGACAAGGAGAAACG
CGCAAATGACTATGAGGAGTTGCTGGAGCAATTAAAGGCGACCGTCAATC
TTCACCTAACGGCCTATAAGCTGAAGAAGTGCATCACCAGCCTACACGCG
CAGTATGCGTCGATCTCGCGGCAGAAGAAAACTCAGAAACTAACCAAGGT
TCCACTGTACTACCATGGAAAGTACAGCTTTCTGGCAGAGCGCGGTAGTC
TGGAGGATGCGGACAGCGATGATGTCGACGGCGATGGCAAAATAAAGCTG
GTGTTCACAGAGGAGAATCAACTGACCACACAGTTCATTGATTTGTACTC
CAAGTTTCCCCAACTGTACGATCCCGCGCACAGCACTTCTGCATCTAAAC
GTACGAAAGTCATCGCTCATAGAGATCACTGACCTGCTGACTTCGGAGTT
TCGGTCGGGCCTGTCACCCCACTACGATGTCTACGACAGTATCGAGCATG
CGCCATGTATTCGCGACGGAATCAAATCCTCCCAGAACGTCATGTGTGGG
TTTCCTCGCTTACGAAAGCGATT
UFO10072.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 54..1112 | 8..1060 | 4870 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7512270..7512696 | 434..8 | 2135 | 100 | Minus |
| 2R | 25286936 | 2R | 7511841..7512203 | 797..435 | 1800 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7511540..7511786 | 1036..796 | 795 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:09 has no hits.
UFO10072.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:57 Download gff for
UFO10072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 29..1067 | 8..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:11 Download gff for
UFO10072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 54..1092 | 8..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:19 Download gff for
UFO10072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 54..1092 | 8..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:19 Download gff for
UFO10072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7511536..7511784 | 798..1041 | 93 | <- | Minus |
| 2R | 7511841..7512203 | 435..797 | 99 | <- | Minus |
| 2R | 7512270..7512696 | 8..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:11 Download gff for
UFO10072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3399041..3399289 | 798..1041 | 93 | <- | Minus |
| arm_2R | 3399346..3399708 | 435..797 | 99 | <- | Minus |
| arm_2R | 3399775..3400201 | 8..434 | 100 | | Minus |
