UFO10074.5prime Sequence
1104 bp (984 high quality bases) assembled on 2011-10-19
> UFO10074.5prime
CAGTCGACATGACGAAGGACCAGCAGGCGACACCCATTCCCGAGGAGTTG
TACAATCTCACCCAGCTGGCCGAGGTTACTCTGTCCGTTGGTCCTCTGGT
CACGGACGAGGTGAAGCCACTGCCACTGTACGCCTCCTCGGACGACGACT
CCAACTACTACAGCCACAAGGTCTTCGATCGCAGGAAACTGCGTCGTTGC
ACAATCTCCGACTCGAATTCCTGCGCCAGCAGCAGTTCCAGTTCCACCTC
CAGCCGTCAATCCTCGGAGGACCACCTGGGACTCCAGGGGCACTCATCGG
TGCACCACCATCATGGGGAGCAGGGCGAAATCCTCAACAGCACTTCGTTG
CTGGAGGACGAGCACATCTGTCCCGAGTGCGGAAAGAAATACTCCACATC
CTCCAACCTAGCACGTCATAGACAAACGCACAGATCAATCATGGATAAGA
AAGCGCGTCACTGTCCTTATTGCGAGAAGGTGTACGTTTCGATGCCCGCC
TACTCGATGCATGTGCGCACCCACAATCAGGGATGCGAGTGTCAGTTCTG
CGGCAAGCGCTTCTCAAGGCCCTGGCTCCTCCAGGGCCACATCCGCACCC
ACACAGGCGAAAAGCCCTTCAAGTGCGGCGTCTGCGAGAAGGCGTTCGCC
GACAAGAGCAACCTGCGCGCCCACATCCAGACCCACTCGAACACCAAGCC
ACACACATGTGCGCGATGCGGCAAGGCCTTCGCTCTCAAGTCCTACCTGT
ACAAGCACGAGGAGTCATCGTGCATGAAGAATCGAGGAGGCGTTCCGGGA
TCGGGAGCAGCATCCGGCAACCGACCTCCCTCGTCGCCAAAAAGGCAACA
GGCGGAGGTAACAAGCGGCACCATCTCGGCATTGGCTCCTGATCACCTGC
CGCGGCAGTGTGTGCTGCCTCCGATGTCATGCAAGTCTACGCTGGCCAAC
AGCTGTTGCAAGAAGGAAAAGATCGCAGCAGGCCGCATGGTCTTCCAGGG
CTTTCCGGCTGGACAGAAATTGACACGCTTACAGCCACGCAACTTCCGGC
CCAGGAGGAAATATGAAAAGTTCAAGCCGATCACCGGAAATTCAGCCGAA
AAAG
UFO10074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kah-RA | 2825 | CG17181-RA | 337..1428 | 9..1101 | 4990 | 97.7 | Plus |
| sna-RA | 1668 | CG3956-RA | 1041..1161 | 506..626 | 215 | 78.5 | Plus |
| CG12605-RE | 2770 | CG12605-RE | 2273..2415 | 547..689 | 205 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 584479..584958 | 910..432 | 2350 | 99.8 | Minus |
| 3L | 28110227 | 3L | 585017..585441 | 433..9 | 2125 | 100 | Minus |
| 3L | 28110227 | 3L | 584238..584410 | 1083..910 | 280 | 86.4 | Minus |
| 2L | 23513712 | 2L | 15477100..15477220 | 626..506 | 215 | 78.5 | Minus |
| 3L | 28110227 | 3L | 3958746..3958888 | 689..547 | 205 | 76.2 | Minus |
| 2L | 23513712 | 2L | 15424066..15424153 | 621..534 | 185 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:16 has no hits.
UFO10074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:58 Download gff for
UFO10074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17181-RA | 328..1427 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:15 Download gff for
UFO10074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17181-RA | 330..1429 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:24 Download gff for
UFO10074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kah-RA | 330..1429 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:24 Download gff for
UFO10074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 584479..584956 | 434..910 | 99 | <- | Minus |
| 3L | 585017..585445 | 1..433 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:15 Download gff for
UFO10074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 584479..584956 | 434..910 | 99 | <- | Minus |
| arm_3L | 585017..585445 | 1..433 | 99 | | Minus |
