UFO10075.5prime Sequence
1159 bp (952 high quality bases) assembled on 2011-10-19
> UFO10075.5prime
CAGTCGACATGTGCCAGCATCATGGGCTGACATCACAGTCGTTGATGTCC
GGTGGCTCGCACATATCCCTGCTGGGCAGCAGCGGCAGCAGCGGTATGAG
CGGCAGCGGCGTCGGCAGCAGCGGTCAGAGTGTCCCGCAATGTCCCGCCG
CTGTGGCAGCCGCGGATGCCGCAATGATGGGCTCCAATGCCGGCGGCCAT
TGCCGCAGCCTGAGCGGCCTGAGCTCGATCAGCATACCGCCGCCGCCGCC
GGCGCTCTTCAATCCGTGCAGCTCGGCGCTGTCGCTGCAGCAGGCGGCGG
TAACCAGGTGGGGACCGCGCACCTCCTGCCCGGTCCACAGTCCGTTTCGT
GTGCGCGTGCCGAACGGCTCCATCTGCTCCGGACACCAGGCTCTGCTCCA
TAGCCACGATGTGGTGGCCCGGGATGTCTACGGGGAGGAGGCGCTGCGCG
TCACCCCGCCCCCGATGGTGCCCTACCTCAATGGCGACGAGCTGGACAAC
GTCGAGGGCGGCGAACTGCAGCATGTGACCCGGGTGCGACTGGTGCAGTT
TCAGAAGAACACGGACGAGCCCATGGGCATCACGCTGAAGATGACCGAGG
ACGGGCGGTGCATTGTGGCCAGGATTATGCACGGCGGGATGATTCATCGC
CAGGCCTCGCTGCACGTGGGCGACGAGATACGGGAGATCAACGGCCAGCC
GGTGCAGCACCAGTCGGTTGGCCAATTGCAACGAATGCTGCGCGAGGCAC
GCGGGTTCTGTTACCTTCAAGATAGTTCCTTCGTACCGCAGCGCTCCGCC
CCCCTGCGAGCTTTTCAGGATCAGACCCGCTCCGGTGCTTATATTCGTGC
GCGCCCAATTCGATTATAATCCGCTGGATGATGAGCTTATACCCTGCGCC
CAGGGCGGGGCATAATCGTTACGAGTGGGGGCGATATACTGCCAAGATTA
TTAGTAAGGGACGAATCATCACACTGGGGTGGCAGGCGGCGACTTGACAA
CGGGGGGGGGCGGATATCGGGCCCGGAACTGATAACCGTCCCCGGAGACT
GGCAGGAATGGGGCGGGATACCGCTGGCCAGAACGGTTCCGAACAGAACA
AAGCAGGGAACAAGGGTTAAACTGGCTTCAATCTTTCGGGGGCGGCGCAA
AGAAAAAGA
UFO10075.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CASK-RG | 4071 | CG6703-RG | 1320..2346 | 8..1061 | 4555 | 96.7 | Plus |
| CASK-RD | 4017 | CG6703-RD | 1320..2346 | 8..1061 | 4555 | 96.7 | Plus |
| CASK-RA | 4112 | CG6703-RA | 1415..2441 | 8..1061 | 4555 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21803683..21804065 | 390..8 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 21791960..21792149 | 576..387 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 21791729..21791894 | 740..575 | 815 | 99.4 | Minus |
| 3R | 32079331 | 3R | 21789697..21789760 | 904..841 | 320 | 100 | Minus |
| 3R | 32079331 | 3R | 21791531..21791604 | 810..736 | 310 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:23 has no hits.
UFO10075.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:58 Download gff for
UFO10075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RG | 1312..2235 | 1..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:21 Download gff for
UFO10075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RA | 1409..2332 | 1..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:27 Download gff for
UFO10075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RA | 1409..2332 | 1..929 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:27 Download gff for
UFO10075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21791961..21792146 | 390..575 | 100 | <- | Minus |
| 3R | 21789671..21789760 | 841..935 | 92 | <- | Minus |
| 3R | 21790709..21790738 | 811..840 | 100 | <- | Minus |
| 3R | 21791531..21791599 | 741..810 | 98 | <- | Minus |
| 3R | 21791729..21791893 | 576..740 | 99 | <- | Minus |
| 3R | 21803684..21804071 | 1..389 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:21 Download gff for
UFO10075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17615393..17615482 | 841..935 | 92 | <- | Minus |
| arm_3R | 17616431..17616460 | 811..840 | 100 | <- | Minus |
| arm_3R | 17617253..17617321 | 741..810 | 98 | <- | Minus |
| arm_3R | 17617451..17617615 | 576..740 | 99 | <- | Minus |
| arm_3R | 17617683..17617868 | 390..575 | 100 | <- | Minus |
| arm_3R | 17629406..17629793 | 1..389 | 99 | | Minus |
