UFO10076.5prime Sequence
1109 bp (990 high quality bases) assembled on 2011-10-19
> UFO10076.5prime
CAGTCGACATGCATACATCGGATATCAGCATGACCCAGGATCAGGATGTG
AGCACTTGTCGCCTGTGCCACCATAATACGGATCCCAACTCGCTAAACAT
TTTCGATGACACCGTGCAGTTTTGCAAGGATGTGTCCATTGCAGAGGTTT
CCAAGAGTCTCTGGAGCGTTCAGTACGATCGCAACGAATGTTTGTCGGAG
CTCATTTGCTCAAGGTGTCTGGAGATCCTCGAAGAGGCATTCGAGCTGCG
AAAAGGAATGCAGGAGCGGGAACAGTCCCTGCAGGAGCAGCTGAAGGAGA
TGATTAAAGATCATCCGAAGCACCGTCCAGGCCTGAATGGCAACCCCGGA
GTATTCGTACCCGAGGAGGGCTGCATTATTGTGGAAGTTGATCCAGAGAA
TCTGGCAGAGAGCAGTGAAGAGGAATTCGCACTCGGCTCCGATGGGGAGT
ACGAAAACTATGACGACGATGATGAGGAGGAGGAGGAAGACTACGATGAG
GAGGACGAGGAAGATGGCCAGAACGGCGAAGACGTCGACATGCCACTGGG
CATGGATGCGGCCCAGATGGCGGCTCAACAGTCCGTTGCCAACAACGCCA
ACACCACGGAGGCACGGCCAAAGCGAGCGTTCCTCTGTCAATACTGTGAT
CTTGGGTTCACTCTGCCCGCCGAGTGTCAAGAGCACGAGCTGGCTGCACA
CGATCCCAACGCACCGTACTGCTGCAACTTTTGCAACATCAAGCTGGTTA
CCCGGCCTGCTTTGATTTCGCACATAAAGACACTGCATGATCCGGACCGT
CCGTATGTGTGTGCTCACTGTCGGAAGGGTTTTGTGCGCCGCTCCGATCT
TAAAAAGCACACAATCGTGCACACTGGCGTGTAGGCCCTTCACATGCAAC
GTTTGCTCCAAGAAGTTCTCGCGGAATACTAATCTGACCAAGCACATGCG
CATTCATAGCGGTGTCAAGCCCTTTGTTTGCCAGCAGTGTCGCGATCTTC
CAGACGGCTGTCAATGATGCGCCCACACACGTTCGCACGGAAAGTTAGCT
TCATGGTGACGCTGTTCCCTTACTCGTTCCGCGCAGGATAAGCCTAATAC
GCCACAGCA
UFO10076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu2-RB | 2149 | CG9233-RB | 123..1220 | 9..1099 | 4980 | 97.6 | Plus |
| fu2-RA | 1984 | CG9233-RA | 123..1220 | 9..1099 | 4980 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8464830..8465702 | 171..1041 | 4035 | 98.7 | Plus |
| 2L | 23513712 | 2L | 8464610..8464774 | 9..173 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:30 has no hits.
UFO10076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:59 Download gff for
UFO10076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu2-RA | 118..1160 | 6..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:26 Download gff for
UFO10076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu2-RA | 121..1163 | 6..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:31 Download gff for
UFO10076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu2-RA | 121..1163 | 6..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:31 Download gff for
UFO10076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8464608..8464774 | 6..173 | 99 | -> | Plus |
| 2L | 8464833..8465708 | 174..1047 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:26 Download gff for
UFO10076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8464608..8464774 | 6..173 | 99 | -> | Plus |
| arm_2L | 8464833..8465708 | 174..1047 | 98 | | Plus |
