UFO10077.5prime Sequence
1077 bp (969 high quality bases) assembled on 2011-10-19
> UFO10077.5prime
CAGTCGACATGAAATTACGATGCTTTAACCAGGCCCAAACTTCGCACAGT
TGGCACCCCAGATCCGTGTTCAGGGTCGTAAGCAGTTGTCCTCCCGATCG
AAAAAAACGGCCAAGCCCAGCGAGCTGGCAAATCTGTATTGGCCATCTCC
TAACAAATTATCTTGGAATGTTTAAAATGGACTCCGCAGACTTCTGGCAG
CAAGCGCGTGCTCCGTTTGGTCTGCAAACTGCGCTTCACCAATACTCTTC
CCCCCCGAATCAACAGCCAATATCCCACCACGCCCTGCACCACTCCGTTC
CGCAGGAGAACGAGCAGTTGGCCGGAGTTCAACCAGAAGGTCCAGCAGCA
GGATCAGGCGTAGTGGGCAACAACAGTTCCATGGCAATTTCCGGCACCAA
TTCAACTGTGGGCAGCAAGGCGGAGTCCAGTCACATTCCGCAGCAGCACT
CAGAGCAGCAGTCATATGGAAGCGACTCCTTCCGAGGAACGCAGTCGCCC
CAGCTGAGTAGCCACCACCTGTTGTTTAACGCCGCTGCAGCCGCTGCTGC
GGCGGTCCACCTCAAGTCCACGGCGATGCAGAATAACCTCTCGCCAATAG
GCGATCAGGTGCAAAATAACCTTCGCAACTACGGACAAGGATCCTTAAAC
GCCTTATGTGGGATCAAGCCCAAGCAGGAGATGGATGCGAAGACGCCCCT
ACAGCCGTTGGACGAGTGTCCCCACCCTCTAGTTCACGCGCAGCCCAGTC
CCAGTACGGCGGAGACTACTACGACGTGGCCCGACCCACAGGCTAGAGAA
ATCTCGGAAGGTCGAGCACTGATAATCGGACTCGGAGCACCCAGTACGTG
TCCACCGACGATGCACAGTCCAGTGCGCGTCTCATCAGCTGGCAGGACTG
GCCGAGCATTGCAGACTCATCAGTGCCAAGCCATGTCCCCTGAACAGTTG
TAGCTCGAATTTGGGCGCAGACGATGATCCGCACCCACAACAATAGCAGA
CCTTTAGCAGCTCAGCAGTCCCCTAGCACTCTACAACGCCATCCGAGCCA
GCACGACGCCCGAACTCAAATACAATA
UFO10077.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lin29-RA | 3937 | CG2052-RA | 162..1242 | 9..1077 | 4910 | 97.9 | Plus |
| Lin29-RB | 3907 | CG2052-RB | 162..1242 | 9..1077 | 4910 | 97.9 | Plus |
| Lin29-RC | 5533 | CG2052-RC | 1758..2838 | 9..1077 | 4910 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 390451..391531 | 1077..9 | 4550 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:38 has no hits.
UFO10077.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:00 Download gff for
UFO10077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lin29-RB | 135..1221 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:31 Download gff for
UFO10077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lin29-RC | 1468..2554 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:35 Download gff for
UFO10077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lin29-RC | 1751..2837 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:35 Download gff for
UFO10077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 390452..391536 | 1..1076 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:31 Download gff for
UFO10077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 411078..412162 | 1..1076 | 97 | | Minus |
