UFO10078.5prime Sequence
1067 bp (965 high quality bases) assembled on 2011-10-19
> UFO10078.5prime
CAGTCGACATGTTTTGCTACCAGTGCCCCCCAGCCCTCCATCCATGCGGC
CCCCACCCGCCGCGCCTGCCCACCCTCGACTACCCGTTCGCCGCCACCCA
TCCATATACCAGCTACTCGTATCATCCTGCCATACACGATGAGACTTTTG
TCCGGCGGAAGCAGCGTCGAAATCGCACCACCTTCACACTGCAACAGCTG
GAGGAGCTGGAGACGGCCTTTGCCCAGACCCACTATCCGGATGTATTTAC
TCGCGAGGATCTGGCCATGAAAATCAACCTGACCGAAGCACGGGTTCAGG
TCTGGTTCCAGAACCGCAGGGCCAAGTGGCGCAAGGCGGAGCGCCTCAAG
GACGAGCAGCGGAAGCGGGAAAATGGAGAGAGCAGCAGCTCCCTGGATAA
GCTGCACGACTCCCGTGAATCCTCGCCAGACATAACGGGTGAAATAGACG
ATGACATGGATGACTTGCCGCCTCGTCAGAGGTCGCACAGTCCGCTGGCC
AACGGACAAATGGAGCAGCAGCACTCGCACTCGCATTCCCACTCCCATTC
CCGCAGTCCTGGCGGCGGCATGCACCTGGACTCCAGCGACAACGAGCGCC
CGTTGTCCTCCAACCAGTTGACCGCCACTCCGCACTCTGCCTCCCAGTCG
CTGGGCTCCATCAGTGCCGGATCCCCCTCCCCATCGGGCATGCACAGGGA
ACGGGAGCACACACCTCTGGTCGGAGGCGGTGGTCAGGGACCGAGCAGCC
CCTCAACTCGCGGAACACCGACTCCCCCATCGAGGTGGGCGGACCAATGT
CCCTGACTACGGGCTCCAGGATGGCGGCCTCCTCCAACAATTCGGCCTCA
TCCACGCCCACGCCCACCACCCACATGCCCCCAGATGCCGCACTCTTCGG
CGGCTGCGGCTGCCGCTTTTGAGCCACATCTTTGGCACTTTGGAGGTGGC
AGCATGCCAGCGATAGTAACTGCGCTTTCGTCCCGTCTGATGACAACGCC
GTGCAGCTGGCGGCGGCGCAGCATGCGCCCAGCGGAGCGCCAACACCACC
GCTTCTACACCCCACTG
UFO10078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34340-RF | 2989 | CG34340-RF | 590..1651 | 9..1054 | 4815 | 98 | Plus |
| CG34340-RE | 2612 | CG34340-RE | 590..1651 | 9..1054 | 4815 | 98 | Plus |
| CG11294-RB | 1291 | CG11294-RB | 227..400 | 162..335 | 270 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3684060..3684633 | 400..966 | 2555 | 98.8 | Plus |
| 2L | 23513712 | 2L | 3678360..3678466 | 195..301 | 535 | 100 | Plus |
| 2L | 23513712 | 2L | 3683864..3683968 | 297..401 | 525 | 100 | Plus |
| 2L | 23513712 | 2L | 3673205..3673301 | 9..105 | 485 | 100 | Plus |
| 2L | 23513712 | 2L | 3678207..3678302 | 102..197 | 465 | 99 | Plus |
| 3R | 32079331 | 3R | 18237854..18237994 | 195..335 | 255 | 78.7 | Plus |
| 2L | 23513712 | 2L | 578177..578314 | 198..335 | 225 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:44 has no hits.
UFO10078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:01 Download gff for
UFO10078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34340-RE | 583..1651 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:35 Download gff for
UFO10078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34340-RE | 583..1651 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:38 Download gff for
UFO10078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34340-RE | 583..1651 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:38 Download gff for
UFO10078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3678211..3678302 | 106..197 | 100 | -> | Plus |
| 2L | 3678363..3678464 | 198..299 | 100 | -> | Plus |
| 2L | 3683867..3683968 | 300..401 | 100 | -> | Plus |
| 2L | 3673198..3673301 | 1..105 | 97 | -> | Plus |
| 2L | 3684062..3684633 | 402..966 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:35 Download gff for
UFO10078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3673198..3673301 | 1..105 | 97 | -> | Plus |
| arm_2L | 3678211..3678302 | 106..197 | 100 | -> | Plus |
| arm_2L | 3678363..3678464 | 198..299 | 100 | -> | Plus |
| arm_2L | 3683867..3683968 | 300..401 | 100 | -> | Plus |
| arm_2L | 3684062..3684633 | 402..966 | 98 | -> | Plus |
