UFO10079.5prime Sequence
1096 bp (976 high quality bases) assembled on 2011-10-19
> UFO10079.5prime
CAGTCGACATGGTACGAAAAAAACGAGAAATCGTAATAAAGGAAAATATT
CAAGGACGAAGTTACCTTAAAAAAATATGTTGTTCGTATATAATACTGTC
CATCCTCGTAATTTCTAATGCCTTGCCCCCAGTAATACGAGTAGGTGCCA
TATTTACGGAAGATGAACGCGAAAGCAGTATTGAATCTGCATTTAAATAC
GCAATATACCGTATAAATAAGGAAAAGACTCTTCTTCCCAATACACAATT
GGTTTACGATATTGAGTATGTTCCCCGAGATGACTCGTTTCGCACTACTA
AAAAGGTTTGCAGTCAGTTGGAAGCAGGTGTTCAAGCAATTTTTGGCCCA
ACAGATGCTCTTTTAGCTAGTCATGTACAATCCATATGCGAAGCATATGA
TATACCCCATATTGAAGGTCGAATTGACCTCGAATATAATTCTAAAGAAT
TTTCTATAAATTTATATCCGTCGCATACGCTCTTAACTCTAGCATATAGA
GATATAATGGTATATTTGAACTGGACGAAGGTGGCAATAATTTATGAAGA
AGATTATGGTCTATTTAATTTGATGCACTCATCATGTGAGACGAAAGCGG
AAATGTATATAAGGCAAGCAAGTCCGGATTCCTATCGCCAAGTTTTACGA
GCGATACGTCAAAAGGAAATTTACAAAATAATAGTGGATACAAATCCGTC
CCATATAAAATCGTTTTTTAGATCCATTTTGCAACTACAAATGAATGACC
ATCGTTACCATTATATGTTTACAACATTCGACTTGGAGACATATGATCTG
GAAGATTTCAGATATAACAGCGTAAATATAACTGCATTTCGGCTGGTAGA
TGTCGATAGCAAAAGATATCTCGAAGTATTTAATCAAATGCAGAAATTAC
ACACAATGGATTGCACACTATAAATGAAGTCCTTATATACAGACGAGTCG
CATAATGTTTGATCGGTGTACGCGTTGCGAATGACTACACTTTCTAAATT
TGGAATATCACCAAATTTTTATATCAAAACTATCTGCACCTCGAACAACT
TGATGATGATTCTTGTAAACAATATGCACATCCAGACGACTGACTG
UFO10079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11155-RD | 4984 | CG11155-RD | 149..1194 | 9..1042 | 4850 | 98.3 | Plus |
| CG11155-RB | 3644 | CG11155-RB | 149..1194 | 9..1042 | 4850 | 98.3 | Plus |
| CG11155-RA | 2979 | CG11155-RA | 149..1194 | 9..1042 | 4850 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1127000..1127417 | 143..560 | 2090 | 100 | Plus |
| 4 | 1348131 | 4 | 1128488..1128655 | 558..725 | 810 | 98.8 | Plus |
| 4 | 1348131 | 4 | 1129566..1129730 | 780..942 | 695 | 97.6 | Plus |
| 4 | 1348131 | 4 | 1126808..1126943 | 11..146 | 680 | 100 | Plus |
| 4 | 1348131 | 4 | 1129435..1129489 | 726..780 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:53 has no hits.
UFO10079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:01 Download gff for
UFO10079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RC | 144..1196 | 9..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:40 Download gff for
UFO10079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RA | 149..1201 | 9..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:41 Download gff for
UFO10079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RA | 149..1201 | 9..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:41 Download gff for
UFO10079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1126802..1126941 | 4..144 | 97 | -> | Plus |
| 4 | 1127002..1127415 | 145..558 | 100 | -> | Plus |
| 4 | 1128489..1128655 | 559..725 | 98 | -> | Plus |
| 4 | 1129435..1129488 | 726..779 | 100 | -> | Plus |
| 4 | 1129566..1129730 | 780..942 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:40 Download gff for
UFO10079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1150192..1150356 | 780..942 | 97 | -> | Plus |
| arm_4 | 1147428..1147567 | 4..144 | 97 | -> | Plus |
| arm_4 | 1147628..1148041 | 145..558 | 100 | -> | Plus |
| arm_4 | 1149115..1149281 | 559..725 | 98 | -> | Plus |
| arm_4 | 1150061..1150114 | 726..779 | 100 | -> | Plus |
