UFO10080.5prime Sequence
1078 bp (973 high quality bases) assembled on 2011-10-19
> UFO10080.5prime
CAGTCGACATGGTGTTCCAAATAATAATCCTGGTGATCTGCACCATCTGC
ATGAAGCACTACGCCAAAGGGGAGTTTCAACAAAGTCTGGCCATAACCGA
CATCCTGCCCGAGGACATCAAGCGTTACGACAAGATGAGACCGCCGAAGA
AAGAGGGTCAGCCGACGATAGTCTACTTCCATGTGACGGTGATGGGTCTG
GACTCCATTGATGAGAACTCGATGACTTATGTGGCGGATGTGTTCTTTGC
ACAGACGTGGAAGGATCATCGCCTGCGATTGCCGGAGAATATGACACAGG
AATACCGCCTGCTCGAGGTGGACTGGCTAAAAAATATGTGGCGGCCGGAT
TCGTTTTTCAAAAACGCCAAATCGGTGACCTTTCAGACCATGACAATACC
CAATCACTATATGTGGCTGTACAAGGATAAGACCATTCTGTACATGGTCA
AACTAACACTGAAGCTGTCCTGCATCATGAACTTCGCCATTTATCCTCAT
GATACACAGGAGTGCAAGCTGCAAATGGAAAGCCTGTCCCACACCACGGA
TGACTTGATATTCCAGTGGGATCCAACAACGCCCCTTGTGGTTGATGAAA
ACATCGAACTGCCGCAGGTGGCCCTCATCCGAAATGAAACGGCGGACTGT
ACCCAAGTTTATTCCACTGGCAACTTCACATGCCTGGAGGTGGTGTTCAC
CCTTAAGCGTCGTTTGGTTTACTACGTTTTCAACACCTACATTCCCACCT
GCATGATAGTGATCATGTCATGGGTATCCTTCTGGATCAAACCGGAGGCG
GCACCAGCCCGTGTGACTCTGGGTGTCACCTCCTTGCTAACGCTTTCCAC
GCAACACGCCAAATCGCAGTCGTCTTTGCCACCTGTTTCCTATCTCAAGG
CAGTGGACGCCTTTATGTCCGTTTGCACGGTGTCGTGTTTATGGCCCTCA
TGGAGTATTGTCTAATAAACATCGTCGTGAGCGACACGCCCATTCCAAGC
CGATGGCCTATCCACCCAACTGGTGGCGGGAGATGCCCCAAGATGAGCTA
GTGCTCTCTCTGGGGCAGACCGCCACGC
UFO10080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ort-RA | 2158 | CG7411-RA | 349..1387 | 9..1043 | 5035 | 99.2 | Plus |
| HisCl1-RD | 1693 | CG14723-RD | 548..811 | 159..422 | 285 | 74.3 | Plus |
| HisCl1-RC | 1707 | CG14723-RC | 430..693 | 159..422 | 285 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19662286..19662789 | 535..1035 | 2325 | 98.8 | Plus |
| 3R | 32079331 | 3R | 19661721..19662175 | 80..534 | 2275 | 100 | Plus |
| 3R | 32079331 | 3R | 19661592..19661662 | 9..79 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 11788021..11788219 | 224..422 | 185 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:33:01 has no hits.
UFO10080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:02 Download gff for
UFO10080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 342..1390 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:44 Download gff for
UFO10080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 342..1390 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:44 Download gff for
UFO10080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 342..1390 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:44 Download gff for
UFO10080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19661585..19661662 | 1..79 | 94 | -> | Plus |
| 3R | 19661721..19662175 | 80..534 | 100 | -> | Plus |
| 3R | 19662286..19662801 | 535..1047 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:44 Download gff for
UFO10080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15487307..15487384 | 1..79 | 94 | -> | Plus |
| arm_3R | 15487443..15487897 | 80..534 | 100 | -> | Plus |
| arm_3R | 15488008..15488523 | 535..1047 | 98 | | Plus |
