UFO10081.5prime Sequence
1080 bp (927 high quality bases) assembled on 2011-10-19
> UFO10081.5prime
CAGTCGACATGTCTACGGAGGAGCATGTGTGGCGAGCGCACGTCGTGCGG
CGCTTACGCGAGCGAAATCGCAAGGAGTGCGACAACTTCAAGGAGATCAT
CGAGCAAAACAACCGACTGATTGACCATGTGGCGCAACTGAAGGCGGACA
ACCTGAAGATCTCCGTCGAAAACGAGCAGCTCCGCAACGCGGTGTCAACA
GGTGGCACCGGCTCCAACGTGGCTATCGCCACCCTCGAAAAGAAGCTGCT
CAGCCAGCAGGAGGAGCTCACAGAGCTACACAAGCGCAAGGGCGAGAACT
CCCAGATGATCGTGGACCTCAACCAGAAGGTCGAGCAGCAGAGGATCATA
ATTTCCGAGAAGGAGCACAGCCTCGTCGAACAGCAAACGAACAACAACCG
ATTGCGCGCGGAGGTGCAGCTACTTCACTCGAGTTTGGAGGAACTCAAGA
AGCTGAACAACACAATGCTGGACGAACATACGGCGCTTCAATTGGCATTT
AGCTCCCTCGAGGAGAAGTTAAGGGGAGTGCAAGATGAAAATCGGCGTCT
ACTGGAGCGACTTATGCAATACAAGTCAATGGGATGCCGACAAGTTGAAC
GAGGAAAACGAGAGCATAATTAGGAAACGTTCGGCTAAACTGAAACGTGA
CCTAGAAGACGCGGTTCGTGAGCCCAGTTCGTCCAGCAACGCCGCCTCCT
CGCCCGGCGCCGCATCCTTGCAGCGCAACTCCAGTCCCGCCCAGTTCGTT
GGCGGCCTCATCGGCGACGAGGATTTCGACGAGGCTGCGATAAATGGCGC
CATGGAGGCCATAGGTCTCGATGATAATGAATATATTAGCGCTCGTTTAC
AGCAGCGAAATCGCCGAGAACTCGCGGGCCTTCCATCGACACCCTGAACC
CACGGGCTACCTGCGGCAGGCCAATCCCAACTAGATCTCATGAGTTCGAG
GCCAACGAGAACGAGTCGACGCGTGCGCTGGAGTTACGTGGACGCATGGT
GCACCGGTGGCGCTGATCCCAAGTCAACTTGGACTTGCAAAAATTCCACG
AACCACTGCCGTTCTAGCCGGAGCATGCTG
UFO10081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg16-RC | 2350 | CG31033-RC | 255..1346 | 7..1080 | 4760 | 96.9 | Plus |
| Atg16-RF | 2374 | CG31033-RF | 255..1370 | 7..1080 | 4510 | 94.8 | Plus |
| Atg16-RB | 1668 | CG31033-RB | 100..664 | 534..1080 | 2125 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29831941..29832350 | 1022..622 | 1390 | 94.9 | Minus |
| 3R | 32079331 | 3R | 29834361..29834622 | 370..109 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 29833932..29834097 | 534..369 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 29834746..29834847 | 108..7 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 29833192..29833281 | 624..534 | 390 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:09 has no hits.
UFO10081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:03 Download gff for
UFO10081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31033-RD | 255..1346 | 7..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:49 Download gff for
UFO10081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg16-RC | 255..1346 | 7..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:47 Download gff for
UFO10081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg16-RC | 255..1346 | 7..1080 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:47 Download gff for
UFO10081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29831945..29832348 | 624..1018 | 95 | <- | Minus |
| 3R | 29833193..29833281 | 534..623 | 97 | <- | Minus |
| 3R | 29833933..29834095 | 371..533 | 100 | <- | Minus |
| 3R | 29834361..29834622 | 109..370 | 100 | <- | Minus |
| 3R | 29834746..29834847 | 7..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:49 Download gff for
UFO10081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25658915..25659003 | 534..623 | 97 | <- | Minus |
| arm_3R | 25657667..25658070 | 624..1018 | 95 | <- | Minus |
| arm_3R | 25659655..25659817 | 371..533 | 100 | <- | Minus |
| arm_3R | 25660083..25660344 | 109..370 | 100 | <- | Minus |
| arm_3R | 25660468..25660569 | 7..108 | 100 | | Minus |
