UFO10082.5prime Sequence
1081 bp (983 high quality bases) assembled on 2011-10-19
> UFO10082.5prime
CAGTCGACATGATTCCCTGCGTGAGTTTGGCCGAAACGAGCGTCATTGGC
AACATGAAGGAGCGGGTCAAGGAAATGAAGGTGTTCGGCTGCCGACTCAA
CTTCTGGAACCACATTGGTCACAGCCTGACCAGTTCCAAAACCAAAGAAG
GCAACGGCAGTTCTCCAGCCCAGAATTCAACGCGCAGCATCAGTCCCAAC
AGCTCCACGACCAACAGTCAGTTTAGCTTGCAGCACAACAGCTCGGGGAG
TCTCGGCGGAGGAGTGGGCGGCGGATTGGGAGGCGGAGGCAGCCTTGGCC
TAGGCGGCGGAGGAGGAGGTGGCGGCAGTTGCACGCCCACATCGCTACAG
CCTCAGTCCTCGCTGACAACTTTCAAGCAGTCCCCAACTCTATTGAACGG
CAACGGAACTCTATTGGATGCCAATATGCCTGGCGGTATACCCACTCCCG
GAACACCAAATTCCAAAGCCAAGGACAACTCCCACTTTGTCAAGCTGGTG
GTGGCTCTCTATCCATTCAAGGCCATCGAAGGCGGCGATTTATCGCTGGA
AAAGAATGCCGAATACGAAGTGATAGATGACTCACAAGAGCACTGGTGGA
AGGTCAAAGATGCCTTGGGGAATGTCGGCTATATACCCAGCAACTATGTC
AAGCCGAAGGCTCTTCTGGGCCTGGAGCGCTATGAATGGTATGTGGGCGA
CATGTCACGACAGAGAGCCGAATCGCTGCTGAAGCAAGGTGATAAGGAGG
GCTGCTTTGTGGTCAGGAAGTCATCGACCAAGGGTCTCTACACACTATCG
CTGCATACCAAAGTTCCACAGTCGCATGTGAAGCACTACCACATCAAGCA
AAATGCTCGCTGCGAGTATTATTTGAGTGAGAGCACTGCTGTGAAACAAT
TCCCGGATCTGATTACTACCATCGCCACAACTCTGGGGGTTTAGCTTGCG
GACTCAAATCCTCGCCCTGCGAACCGCCCAGTTCCACCGACCGCGGGATG
TCCCCACGACAATGGGAGATCATCCGATGACCTGATGCTGAATGGAGGAC
TGAATCGGACGTTGTGTTGTGCGGCCGCAGT
UFO10082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Btk29A-RF | 4992 | CG8049-RF | 2148..3222 | 9..1075 | 4915 | 98 | Plus |
| Btk29A-RA | 4026 | CG8049-RA | 432..1506 | 9..1075 | 4915 | 98 | Plus |
| Btk29A-RC | 3279 | CG8049-RC | 435..1509 | 9..1075 | 4915 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8262475..8262682 | 356..149 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 8271935..8272077 | 151..9 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 8261484..8261681 | 1012..815 | 695 | 94.5 | Minus |
| 2L | 23513712 | 2L | 8261943..8262075 | 685..553 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 8261740..8261868 | 814..686 | 645 | 100 | Minus |
| 2L | 23513712 | 2L | 8262284..8262404 | 474..354 | 605 | 100 | Minus |
| 2L | 23513712 | 2L | 8262139..8262221 | 554..472 | 415 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6934 | 122..252 | 112 | 63.7 | Plus |
UFO10082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:03 Download gff for
UFO10082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RF | 2211..3288 | 9..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:55 Download gff for
UFO10082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RC | 435..1512 | 9..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:50 Download gff for
UFO10082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RC | 435..1512 | 9..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:50 Download gff for
UFO10082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8262285..8262401 | 357..473 | 100 | <- | Minus |
| 2L | 8262475..8262680 | 151..356 | 100 | <- | Minus |
| 2L | 8271936..8272077 | 9..150 | 100 | | Minus |
| 2L | 8261425..8261681 | 815..1064 | 91 | <- | Minus |
| 2L | 8261740..8261868 | 686..814 | 100 | <- | Minus |
| 2L | 8261943..8262073 | 555..685 | 100 | <- | Minus |
| 2L | 8262139..8262219 | 474..554 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:55 Download gff for
UFO10082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8261425..8261681 | 815..1064 | 91 | <- | Minus |
| arm_2L | 8261740..8261868 | 686..814 | 100 | <- | Minus |
| arm_2L | 8261943..8262073 | 555..685 | 100 | <- | Minus |
| arm_2L | 8262139..8262219 | 474..554 | 100 | <- | Minus |
| arm_2L | 8262285..8262401 | 357..473 | 100 | <- | Minus |
| arm_2L | 8262475..8262680 | 151..356 | 100 | <- | Minus |
| arm_2L | 8271936..8272077 | 9..150 | 100 | | Minus |
