UFO10084.5prime Sequence
914 bp (837 high quality bases) assembled on 2011-10-19
> UFO10084.5prime
CAGTCGACATGCCCACGGAAAGCTCATCCAGCGAGATCTCCGGCGGAGGA
GGCGGTGCGATACCCATGCTGCGACCTTCCCGGATGGATCAGTTCATGAA
CTCGATGGCGGCGGCAGCGGCGGCGGTGGGTGGTGGCGGTCTTCCTGGTG
CGGCGGATAGGAACGGCGGATCCGGAGGATCGGATGGTGGCTCCCAGAAT
GGCAACGGCGATTCGCGCAACTCATCGGCCAGCCGGATCTCAGCGTATGA
AACACAGCTGGCCTATCAGCAGCATTTGGCCGGACTGCATGGTCCGCCGC
CACCGCCACCACCATCGCATCATCGCGAGATCTCTGCCTTTGTGCCGGTT
CTGCCCACCGGAAAGGTGCGCCCGGGTAGTAATTCCAATTACGAAATCAT
TGCCATGATGGCGGACAAGCGAAAGGAGTTGGCCCTAAGGGAGGCGGCTG
CGGCGGCGGCAATGTTAGGACGAGGTCCTGGAGGACCCGGCGGTCCTGGT
GTGCCACCGCCTGGAGTGTTGTACGGACCAGCTGGCGTGCCACCTCCGCC
ATACCTCACCGGACCGGGTCCATCGCCCACGGGAGCCGGAAGTTTTCCAT
TTCCACCAGGAGCCGCCGCCGCAGCTCTATTTCCACCTGACCTGAGTCCT
GAATGCATGCCGGACTCGATAGGCGCCTGCTACGTGCTCCTGGTCGGGCA
TCGCGGCCTAAAAAACAGTTCATCTGCAAGTTCTGCAATCGACAATTCAC
CAAGTCGTACATCTGCTCATCCACGAGAGGACACACACGGACGAGCGGCC
CTATTCCTGTGATATCTGCAGCAAGGCGTTCCGGCGACAGGATAACCTGA
GGCTCAAAGGTATATTCAACTCCAAGGAGAACCCCTCCAAATGCACGGAA
TGCCGGCAAGGAAT
UFO10084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bowl-RH | 3435 | CG10021-RH | 364..1267 | 9..911 | 4270 | 98.5 | Plus |
| bowl-RG | 3394 | CG10021-RG | 323..1226 | 9..911 | 4270 | 98.5 | Plus |
| bowl-RF | 3507 | CG10021-RF | 436..1339 | 9..911 | 4270 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3779726..3780571 | 9..852 | 4055 | 99.2 | Plus |
| 2L | 23513712 | 2L | 3605390..3605530 | 843..704 | 385 | 86.5 | Minus |
| 2L | 23513712 | 2L | 3578863..3579013 | 852..703 | 345 | 83.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:23 has no hits.
UFO10084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:04 Download gff for
UFO10084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RD | 552..1465 | 1..914 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:00 Download gff for
UFO10084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RF | 429..1342 | 1..914 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:53 Download gff for
UFO10084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RF | 429..1342 | 1..914 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:53 Download gff for
UFO10084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3779719..3780579 | 1..859 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:00 Download gff for
UFO10084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3779719..3780579 | 1..859 | 98 | -> | Plus |
