UFO10085.5prime Sequence
1084 bp (866 high quality bases) assembled on 2011-10-19
> UFO10085.5prime
CAGTCGACATGTCGCTGTTACTAACGTTGATCGCACTTCTAGTGTCACTG
CTTTTGTTCATGGCCCGCCGACGTCATGGATACTGGCAGAGGCGGGGTAT
TCCGCACGATGTGCCCCATCCAATATACGGAAACATGAAGGACTGGCCCA
AGAAGCGACACATTGCGATGATCTTCCGGGACTACTATACAAAGTACAAA
CGTTCCGTTTATCCGTTTGCCGGGTTCTACTTCTTTTTCACCCGGTCTGC
TGTCATCACCGACTTGGAATTGGTCAAGAGGGTGCTGATCAAGGACTTCA
ATCACTTTGAGAATCGAGGAATTTTCTACAATGAGATCGATGATCCGCTG
TCGGCCACCTTGTTCAGCATCGAGGGTCAGAAGTGGCGTCATCTGAGGCA
CAAACTGACACCCACTTTTACGTCCGGCAAAATGAAGAACATGTTTCCGA
TTATTGTGAAGGTTGGGGAGGAAATGGAGAAGATTTTCAGTGCTAAAACC
ACCACAGGTGAAGGTCAAGTTCTGGAAATTGTGGATCTGGTGGCTCGATA
TACGGCTGACGTAATCGGTAATTGCGCCTTCGGTTTAAATTGCAATAGTT
TGCAAAACCCGAATGCAGAGTTTGTGACAATCGCAAAAAGGGCGATCATA
GAACGTCGTTATGGAGGACTATTGGATTTCCTGATATTCGGATTTCCCAA
ACTTTCCCGCCGCCTGCGGCTTAACTAACGTGCAAGATGTTGAGGACTTT
TACACTAGCATTGTTAGGAATACTATCGACTACCGATTGAGGACCAACGA
GAAGCGTCACGACTTCATGGACAGTTTAATCGAAATGTACGAGAAGGAGC
AAGGCCGGAAACACTGAGGTGGGCCCTGCCCATCTGCAAATCTTGGCACC
AGCCTTTTATTTTTCTTTGGTGGCCTGGCCTTCAAACCAGCCTTCGACGA
ACCATGGGAATTTGGCCCTGTAACAAGCCTCTGCCCCTCATCACAGGAAA
TTCCAGGAATCAACTTAAGGGCGGAAATCCCACCATTGTTTTCTTGAGCC
CAAACCCATACCACCGAGTTTACCTCTACCAAGG
UFO10085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a23-RA | 1761 | CG10242-RA | 33..1037 | 9..1029 | 4275 | 96 | Plus |
| Cyp6a17-RB | 1727 | CG10241-RB | 61..869 | 45..851 | 1510 | 79.7 | Plus |
| Cyp6a17-RA | 1546 | CG10241-RA | 61..869 | 45..851 | 1510 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14875861..14876722 | 9..869 | 4140 | 99.2 | Plus |
| 2R | 25286936 | 2R | 14874013..14874616 | 45..648 | 1445 | 82.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:33:31 has no hits.
UFO10085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:05 Download gff for
UFO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a23-RA | 29..904 | 9..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:04 Download gff for
UFO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a23-RA | 33..908 | 9..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:57 Download gff for
UFO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a23-RA | 33..908 | 9..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:57 Download gff for
UFO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14875861..14876756 | 9..904 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:04 Download gff for
UFO10085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10763366..10764261 | 9..904 | 98 | <- | Plus |
