UFO10087.5prime Sequence
1125 bp (863 high quality bases) assembled on 2011-10-19
> UFO10087.5prime
CAGTCGACATGGCCCAGTTTGTGACCCACATCCAGCCAACGCTGATGGAG
GCGTCCCAAGGTCATGTTCCTCACCACCACGGACATCAGGTGGGTGTGCA
GCACTCGTCGCATCTGCCCCACAGCGGCCACAACATGCCCTCGCCGCCAA
CCCACAATCACCATCATGCCCACGGACATGGTCATCATACCAGCAGCGGT
GGTCATCATGGAGGAGCAGGTGGCCATTCACAGAAGCAGGCAGCGCATCA
TAGCACCACCTCCGGCCACGCCGCCAAGGGACAGCACCACAGCCCACCGT
CGAGGATCCATTCACCGCCAACGGAACACCATCCGGATCATGTCGGTCAC
TACGAGTACTTCCAGCATCAGCACGAGCAGATCTTCCACCATGAAGGAGC
AAACGGTGGTGCCAGCCACAAGCAACAGACCCACCACCATCCCAACAAGC
ACGAGCACTGCCCCACAGGACACCAGAGTGCGGGCGATGGAAACACTTCC
TTCCTGCGTGCCGCTCGCGCCGGAAATCTGGAGCGAGTGCTCGAGCATTT
GAAGAACAACATTGACATTAACACCAGCAATGTGAATGGCTTGAATGCCC
TGCACCTGGCCTCCAAGGATGGCCACATCCACGTCGTCTCGGAACTCCTT
CTGTAGGGGCGCGATTGTGGATAGTGCCACCAAAAAGGGAAACACTGCCC
TCCACATCGCCTCATTGGCTGGACAGGAGGAGGTGGTGAAGCTACTGCTG
GGAGCACAATGCCTCCGTAATGTGCAATCCCAGAATGGAATCACTCCACT
CTACATGGCTGCCCAGGAGAAACACGATGCTGTGGGTGCGTCCTCCTTTT
TGTCCAACGGAGCACATACAAGAGTTCTGGGCTGTCGAAGGATGGCTTTC
CCCCCCCCTGGGGGGTGGGCCATGGCACCTAGGGTGTGAACAAAGTCGTT
TGCTTGTCCTCCCTCCAAAAGTAATACTTCATGGTAAGGGTCATGCCTTC
CTTGCCCTTGCACATTTGGCCGTGAAAAAGAACGAACGTCCAATGTAGCC
AATTCTCTGCCTTTCTTCGAATAAATGGACCATAAATCCCGGACCTGGAC
CTTCCCAAGTTCGGGCCTTTCCCCC
UFO10087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ank2-RE | 2780 | CG42734-RE | 556..1406 | 9..863 | 4085 | 98.9 | Plus |
| Ank2-RK | 14309 | CG42734-RK | 556..1406 | 9..863 | 4085 | 98.9 | Plus |
| Ank2-RR | 15005 | CG42734-RR | 556..1406 | 9..863 | 4085 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7717366..7717840 | 483..9 | 2375 | 100 | Minus |
| 3L | 28110227 | 3L | 7710552..7710802 | 835..584 | 1085 | 98 | Minus |
| 3L | 28110227 | 3L | 7710870..7710970 | 582..482 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:33:38 has no hits.
UFO10087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:05 Download gff for
UFO10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RE | 493..1364 | 1..880 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:10 Download gff for
UFO10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RR | 549..1420 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:00 Download gff for
UFO10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank2-RR | 549..1420 | 1..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:00 Download gff for
UFO10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7710513..7710801 | 585..880 | 95 | <- | Minus |
| 3L | 7710868..7710969 | 483..584 | 99 | <- | Minus |
| 3L | 7717367..7717847 | 1..482 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:10 Download gff for
UFO10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7703613..7703901 | 585..880 | 95 | <- | Minus |
| arm_3L | 7703968..7704069 | 483..584 | 99 | <- | Minus |
| arm_3L | 7710467..7710947 | 1..482 | 99 | | Minus |
