UFO10088.5prime Sequence
912 bp (850 high quality bases) assembled on 2011-10-19
> UFO10088.5prime
CAGTCGACATGATGCTGAATAAACACGAGGGATACCAACGCACAAGCCAA
ATGTTTCCCCACCAGCAGCACCAGCTGCCTCAGCTGCACCAGCAGCCTTA
TCTGCAACAGTCTCTGTGCCAAAACTTCCAGCAATTGCAGTACGAAACGG
GAGTAGGTGCTTCGGCGTCAGGGTCCGCCGAGGCTACGGCAGACCTGCTC
AAGGCGGAGCGGGAGTCTATCCACTCCGGCCAGTTTATGGTCTCGCACTT
CGAGGCAGAGGAGGCGCAGGACGACCTAGAGGATGACGGCGAGGTGAAGA
TGCTAGACCCTGAGGACCCCGGTCTGGGCAAGCCGGGCGAGCCAACCAAC
ACATGTCGTGACGTGCAGCTTTACGTACCCCAAACAGTGGCCCACTTCAG
CGCCATGGACCAGGAGGGCGACGAGAGCAGCATGAGCATGGTGACCTCCC
ACCTGGAGATAGAGACCTCGCTCACCAAACTCTTCAAGTGCATGAATCTG
GCCTACAGTCAAAAACTAACCTCACCCAAATGGAATCATTTCAAAGGAGT
ACGACTTCGGTGGAAGGACAAAATTCGCCTGAACAATGTCATCTGGCGTT
GCTGGCACATGCAGTTCATACAAAAGCGCAGAACCCCGGTGTGTCAGTTT
GCGTCGCCGCTGGACGTTGATATACATAGTAATCCTCAAACTGTTGTTCT
TGAAGGCAAATACTGGAAACGGCACTCAGCTGTTATAAAAGCCGAATACA
GGAAATGGCGCAGAACTATAGGTCGAAAGCTACGGGCTGCTTAACATATG
ATTCGAAAAGCGAATTAGACTTTTTGGAATGGTCGTTGCAGTAGATGATC
ACTTTGCGCACTCTACTACTCACAACGGTGAGAGTGCAAGGTCGTGAGTC
ATAGTGGGGGGC
UFO10088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mio-RM | 4068 | CG18362-RM | 495..1322 | 9..835 | 4085 | 99.6 | Plus |
| Mio-RL | 3832 | CG18362-RL | 259..1086 | 9..835 | 4085 | 99.6 | Plus |
| Mio-RK | 3830 | CG18362-RK | 257..1084 | 9..835 | 4085 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21308288..21308787 | 508..9 | 2500 | 100 | Minus |
| 2L | 23513712 | 2L | 21304825..21304936 | 615..504 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 21297695..21297811 | 805..690 | 520 | 98.3 | Minus |
| 2L | 23513712 | 2L | 21301454..21301527 | 689..616 | 355 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-27 00:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2386 | 60..139 | 112 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2495..2536 | 56..97 | 111 | 73.8 | Plus |
UFO10088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:06 Download gff for
UFO10088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RC | 191..1027 | 1..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:13 Download gff for
UFO10088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RK | 248..1084 | 1..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:03 Download gff for
UFO10088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RK | 248..1084 | 1..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:03 Download gff for
UFO10088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21304825..21304931 | 509..615 | 100 | <- | Minus |
| 2L | 21301454..21301527 | 616..689 | 98 | <- | Minus |
| 2L | 21289719..21289744 | 806..831 | 100 | <- | Minus |
| 2L | 21297695..21297811 | 690..805 | 98 | <- | Minus |
| 2L | 21308288..21308796 | 1..508 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:13 Download gff for
UFO10088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21301454..21301527 | 616..689 | 98 | <- | Minus |
| arm_2L | 21304825..21304931 | 509..615 | 100 | <- | Minus |
| arm_2L | 21289719..21289744 | 806..831 | 100 | <- | Minus |
| arm_2L | 21297695..21297811 | 690..805 | 98 | <- | Minus |
| arm_2L | 21308288..21308796 | 1..508 | 99 | | Minus |
