UFO10089.5prime Sequence
1138 bp (916 high quality bases) assembled on 2011-10-19
> UFO10089.5prime
CAGTCGACATGCATCGTTCGCTGAAGCCGCATGCATCCACCGCACAGGCT
AAGAAGGTGCAACCGCCAACGATACCAGGCGACTCGCCGCAGGATTTGCA
TCTCTATCAGCAGCCGCAGCAGCTTCACCACCACCACCATCAACACCCAA
ACCATCATCATCCGCACCACCAGCCATCGATACCGCTCTATCGGCTAAGC
GGACCACTGCGCCATCATCAAAACCACCAGGCGGACGATGGGATCAGCAT
GAGCGGCAGCAGCATCGTTTCGTCGCCCTCGCTGGAGGAGGGTGGCTTCA
ATTTGCCGCGGGAGACGAGTGTGGCCCTGCGTCTTAAGGATGAAGTGGGT
GGCACTTCAACGGCAGCCCCAACCACTGGCGGCCCAGGAGGAGGTGGAGC
GACGGTGGTGGGAGCACCACCACCCGGTGCCGGAAAGCCCGGCGTAGCCA
TGGTTCCACCGCCACCCGTTTTCTGTGCCACTTTGCGCGAACCGCTGACC
CACAAAGCGGCCGTCTACTACCACCAACAGCTGGCCCTGCAGGAGGATCA
GGGCATCGATCTAACCCAATCGCCTGGCCGAGACTCGCGGGGCTCGTCGT
CGGGCTCGGCGGGCTCTGGATCTCGTCACAGCACCGCCAGCTTGGACTCG
GGTCGGGCTGTCCTCCTACCTGACGGGCGTGTCCTCGTCGGGCGCCTCGA
TTCGTGCTCCGCTCTCCTCGCCGCGCTGCAGTTCCGTCAGCTCGTGCTCC
ATTGGCAGTGTGGGATCGGCAGCGCAACGATGAGCTCATCATCGACTGGC
TGCTCGAGATGAAGCACGAGGAGTACGCGCAGCTGTTCATCGCCGCGGGC
TATGATCTGCCCACCATTGCGCGCATGACCGCCGGAGATCTCACCGCCAT
TGGGCAATTAAAAATCCGGCTGCATCGGGAGCGGATTGAAGTGACCGAAA
TCGACCAAGCTGCAAGGTGGCTCGACAAATTTGCCGCCATTGTCGTGGCG
AGGATTTCAAAAGAAGGAATGGGCCTGGCAGCCTGCTGCGCGTCTTGGGA
GGAATTTATTACGGCCCCCTGCTTGGGAACAGAAAACTTATAAAGAACGG
GTGGCCGGAACGTATACCCCACGGTGTAACTTGTGGGA
UFO10089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ckn-RE | 4568 | CG12424-RE | 683..1650 | 8..987 | 4420 | 97.7 | Plus |
| ckn-RD | 4120 | CG12424-RD | 683..1650 | 8..987 | 4420 | 97.7 | Plus |
| ckn-RB | 4039 | CG12424-RB | 365..1332 | 8..987 | 4420 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14971778..14972671 | 8..903 | 4275 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:40:57 has no hits.
UFO10089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:44 Download gff for
UFO10089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12424-RB | 363..1296 | 1..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:26 Download gff for
UFO10089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ckn-RC | 677..1610 | 1..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:15 Download gff for
UFO10089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ckn-RB | 359..1292 | 1..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:15 Download gff for
UFO10089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14971772..14972705 | 1..941 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:26 Download gff for
UFO10089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10859277..10860210 | 1..941 | 98 | | Plus |
