UFO10090.5prime Sequence
1076 bp (930 high quality bases) assembled on 2011-10-19
> UFO10090.5prime
CAGTCGACATGGGTTGGTGGAGCAAGAAAAGCGAGACGGATCGCAGTCAG
CCCAGCCAGGAACTGGTGGCGCAGGACCCGCGCACACGAGTCCAGACTAC
GAGTGCAGCCACGGAGACGACCAACACAGCCGTGCAAAACTCGACCATAA
CGGACAACAACAAGCAGACGGTTACCTTTCTCACCACCCGCCAGACGGTG
ACGCACACGCAGCGGGCGCTGATCACGGAGACGACAACGCGACGCACGCC
TAGTCAGGCGGAGTTAGAGGCTCTCTTCGCAAAGATAAAGATGGGCGGTG
AGGGACCCATTGGCTCCACCACCACCACTACGACGACCACCTCCTCGCGC
TCCCGACCGCCCAGTTTGAACGGCGTCTCCTTTCGCTCCACACAACCCTT
CAAAGCCACGGCAAGCAATGCTGGCAAACGGTCAAGCACCTTAGTCAAGA
CCGAGCAGACGACAGTGACCCAAAAGAATGGGCGCACGGTCACCCAGCAC
CTGGAGACTCATAGAGTGGACCTCAAGGGAAGTCGACCTAAGGCGACCTG
GGCGTCATTTGCGTCCACTGCAAACAGCTCAACATCCAGCTACGTCTCAC
CTTATCGTCAGAAGCCAAGCATGGCCATAACTTGCACATCTCCCAACATC
AAGACACCAAAAACCACTAGCTCCACGTCCAGTTCCAGTGCCAGCTCCAT
TACGAGTCCGCCCAAACCATCATCATCTGTATCCTCCATTTCAAGCATTT
TCAAGTCCGCTCCAAGCAAGTTGACAAGCCGCTCAGTTCTACCGCAACTC
CCAAGCCCTTCATTAGTCTGGGATCGTCAGGAGGCACCAAGCCGAATGTC
ACTGCCGTCGCGCAATCCCAAGATGCCCAGCGCACGATTTCAACGAGCCT
TGGGTATCTCGAAATCAAGTGTGACCAAGAACAACATCAAGCCCGCCCCG
GGTGTATTATTCTTCAACCACGAGCGGTTCGAATAATAAGACGATTCCGA
AAGGGAGTGCCAGGATGTGGAGTTCTTGCCCGCCACTTTGAACAACTGAG
TGCCAAGTGAGTTATTACAGATGCAC
UFO10090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strica-RB | 2720 | CG7863-RB | 103..1173 | 9..1075 | 4845 | 97.5 | Plus |
| Strica-RA | 2163 | CG7863-RA | 103..1173 | 9..1075 | 4845 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6021972..6023042 | 1075..9 | 4560 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:41:03 has no hits.
UFO10090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:45 Download gff for
UFO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dream-RA | 157..1235 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:32 Download gff for
UFO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dream-RA | 95..1173 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:18 Download gff for
UFO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strica-RA | 95..1173 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:18 Download gff for
UFO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6021970..6023049 | 1..1076 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:32 Download gff for
UFO10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1909475..1910554 | 1..1076 | 97 | | Minus |
