UFO10093.5prime Sequence
1101 bp (953 high quality bases) assembled on 2011-10-19
> UFO10093.5prime
CAGTCGACATGTCACTAGCCGGAGTCCTGACCTTTCAGCAGGCCATATCT
GGAGCTGTGTCACCACAGTATGGCACAGTGGGATCGCTAAATTCCCAGGT
ACCCGCTACCGGTGAAGCCGGAAAGCCGGGAATTGTGGGATCCGATGGCA
TTGGCGGTGGCGGTGGCGGTTTACCTGGCGGATCTTCACACAACTTAAAT
TTGACGGTGGGCCTGGGGTTTCTCGGTGGTTCCAGCACCACTTTGGCTGC
TGTCGCCGAGGTGACTAGTGGACCGGATGGCAATGGCGACTCCACCGACT
CCCCATCTCCGGTCTCCATGATTCCCAGCAATCAGCAAAAGCAGCAGCAG
CAACTGTTGCAGTTGCAACTGCAGCAGGAGCAACAGCATCTGCCCACCCA
TTTGCCCATGAAGCGGGAACGAGGCGTAGGCGAGTCCTCGGGGGCCAGCA
CATCCGGCACCGCCATCGCCGAACTGGCCTCCTCCGTCGTCCTGGCCACC
CAGTCCGGCAAGCCGATGACGGAGCGACAACGCTTAAGGACATCCAGCAT
GCCGGCGGAGAGTAGAAGGCCCCTGCCTGGCGGAGATGCGACGTTCGGCC
ATCCATGCCGGTGATCCGGACATGACCTACTACCGTCTGCGAAGCTTCAG
CATCACCTCCCATGGCATCTGCAATTTGGGCGATTCCCTGAGAAGCCGCA
GGTCACGTTCGATCAACTCCGTGACTTCCACCGGCACCTCAAACAGCGGC
GTGGATCGACACAATAGCAACGCATCGGGGGCATCGGGCGAAGTCATCGA
CGGGGATCCCAATGTTCCAGCCTACAAATTGCCATGCTCGGCGCCTCCGG
AGTGGGCAAGACCACACTGACTTACCAGTTCACACTTCAGATTACATATG
CGCCTACCGACCTGAGTTCTCGATGATGACTACGGACAGAAGACGGTTGT
CCGGTGCTGGTCGAAAACATTGAGACGGATTTAGGAAAATTATTGATCAT
CCGGCATTGCGAGATGTCGACCGGAGGCCCTTCCGGCGCCCACTAACAAC
ATCGCCTTTCTTCGGGTGGTCTACTCTGGATAGAATCGAAACACTTTTCG
C
UFO10093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42541-RF | 8763 | CG42541-RF | 3267..4346 | 8..1097 | 4885 | 97.5 | Plus |
CG42541-RE | 9704 | CG42541-RE | 3321..4400 | 8..1097 | 4885 | 97.5 | Plus |
CG42541-RD | 8817 | CG42541-RD | 3321..4400 | 8..1097 | 4885 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3904029..3904590 | 569..8 | 2810 | 100 | Minus |
X | 23542271 | X | 3901121..3901265 | 907..765 | 610 | 97.9 | Minus |
X | 23542271 | X | 3901931..3902052 | 692..571 | 595 | 99.2 | Minus |
X | 23542271 | X | 3901786..3901862 | 767..691 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:41:16 has no hits.
UFO10093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:46 Download gff for
UFO10093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42541-RD | 2200..3287 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:42 Download gff for
UFO10093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42541-RD | 3316..4403 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:24 Download gff for
UFO10093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42541-RD | 3316..4403 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:24 Download gff for
UFO10093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3897556..3897647 | 923..1019 | 91 | <- | Minus |
X | 3901108..3901262 | 768..922 | 96 | <- | Minus |
X | 3901786..3901857 | 696..767 | 100 | <- | Minus |
X | 3901927..3902052 | 570..695 | 96 | <- | Minus |
X | 3904029..3904594 | 1..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:42 Download gff for
UFO10093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3795960..3796085 | 570..695 | 96 | <- | Minus |
arm_X | 3791589..3791680 | 923..1019 | 91 | <- | Minus |
arm_X | 3795141..3795295 | 768..922 | 96 | <- | Minus |
arm_X | 3795819..3795890 | 696..767 | 100 | <- | Minus |
arm_X | 3798062..3798627 | 1..569 | 99 | | Minus |