UFO10094.5prime Sequence
1121 bp (882 high quality bases) assembled on 2011-10-19
> UFO10094.5prime
CAGTCGACATGTATCACTTTGTATCCGAGCAAACGCCGGAGGTGCGGCTC
ACAGATGAGGCACTGGTCACGAGCCACGTGACGCAGTACCTCAAGAGCTT
TCAACTGGATGCCGTCCGCTTCGTCTACGATCGTTTGGCTAAGCGGGAAT
TCTGCATCCTGAATGATGAGAGTGGCCTTGGAAAGGTCGCTACGGTGGCG
GCACTTCTAAGTGCCCTACCACCCGCCAAAAAAACACTTGTGGTGCTCCA
GAACGATGAGCAACTGCTCACCGGTTGGCGATTCCATTTGGACACTCTCA
CTGACCTCCAGGTGTACATCATTCAGGGGGTGCAAGATACCACCGACTCC
CCGCACAGCGTTTACCTGGCGAAATGGAGCCAACTACGGAGCATTGGAGA
TCTCAGTCGCCTCAAGTTCGACTACATTATGGTGGATAATCGGGGGCATT
CGCTGAACAACAGCTTTTGCACTTCCATGCTGCTGAAGCAATTCGAGGGA
CGGGTAAACGTTCTTATCTCCAGTGTTGACGTTACGTCCGACGTTAGGTT
GCTCTACAATGTTCTAGGGTTGGGCGGCCGACTGGAGCATCAGTACAAAA
GCTTTGCGAGCTTCGATCGAAAATTCCATCTGCCAGATCCGAAGGAGGTA
TTCAGTAAGCGCATAGATCTCGAGGAATACTACAAGCAGCGGGGATTCCT
CAGCGAGTACATCAAGGACTTTCGTCTGCGTCGTTTTCGTCATCAATTCG
ACAAGTCACTGCCACTTGTCGCACCGGAGCAATAAAAACACAATCTGAAT
CTCTGGTTGGCCTCAAAGAACAGCCAGAGCACATAATGCGGCTCAGATGT
GTGCTCTACAATCGCTTCCATAAGACAACAATCTGACTCAGCAAAATAAA
ACTGGGCTCCTTGAAGAAACCGATATAGTTTATTCCGAGCACAGCCGTGG
ATGATGGTGGCAATGTCCACCGCCTGATATTTCCCGTTATTCCCGAAGTC
TGACGATGAACCCCTTAACAAGTAGAACCCTGAATGAAGATCAAAACCCG
GTAATAAGTTTGTATCCAGCGAATGAATGTGTGAGAAATTGTAACAACCT
CTCCAAGTATCTCCCGCCAAA
UFO10094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SuUR-RA | 3776 | CG7869-RA | 404..1458 | 8..1081 | 4680 | 96.9 | Plus |
| CG45101-RA | 3776 | CG45101-RA | 404..1458 | 8..1081 | 4680 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11065394..11065722 | 8..336 | 1645 | 100 | Plus |
| 3L | 28110227 | 3L | 11065828..11066029 | 335..536 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 11066095..11066275 | 536..716 | 890 | 99.4 | Plus |
| 3L | 28110227 | 3L | 11066361..11066569 | 716..925 | 880 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:33:54 has no hits.
UFO10094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:07 Download gff for
UFO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SuUR-RA | 392..1331 | 1..945 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:19 Download gff for
UFO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SuUR-RA | 398..1337 | 1..945 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:06 Download gff for
UFO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45101-RA | 398..1337 | 1..945 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:06 Download gff for
UFO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11065388..11065722 | 1..336 | 98 | -> | Plus |
| 3L | 11065830..11066029 | 337..536 | 100 | -> | Plus |
| 3L | 11066096..11066274 | 537..715 | 99 | -> | Plus |
| 3L | 11066361..11066586 | 716..945 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:19 Download gff for
UFO10094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11059461..11059686 | 716..945 | 94 | == | Plus |
| arm_3L | 11058488..11058822 | 1..336 | 98 | -> | Plus |
| arm_3L | 11058930..11059129 | 337..536 | 100 | -> | Plus |
| arm_3L | 11059196..11059374 | 537..715 | 99 | -> | Plus |
