UFO10105.5prime Sequence
1108 bp (945 high quality bases) assembled on 2011-11-01
> UFO10105.5prime
CAGTCGACATGAAACAAATCGTCGTGCTTTGCATATTCTCACTCTTTGCC
AAAGATGCACAAACATTGCTCCTAAGCCAAATGGATTGGAAGAATCTGCG
CAACAGTGGAGCCTTGGACCTAAATGTCTTGCGCTGCTTTTTGCGCGACA
AAAACTATTGTCCCAGTCCACATATCGATCACCGTCTGTATGCACCCAAT
GGACCGCGTCGTGGAACTCCTTTAAATGTTAAGAACCCAATAACGCTTTA
TAAAGGTGGATTTAGCAAGCACCGCGAGACTGTCTTCATAATACACGGAT
TCAATGGAACTGCCATAGATATTCACCTGCAATTCCTTCGAGATGCTTAC
CTATCCCGCGATTTCAATGTCATTACAGTGGACTGGCGACCTTTGACCCG
CTATCCATGCTACCTCCACTCGCTTATAAACACCAGGTTAACTGCGCAAT
GCACCGCCCAGATCTACGCCTTCCTCACCCACTACGGAGCTGTCCGGGAA
CGGATCACTTGCGTGGGTCACTCCCTGGGCGCCCACATCTGCGGCATGAT
CAGCAACCACCTGACGCGGAAACAGTATCGCATCATTGGATTGGATCCCG
CCCGGCCTTTAATTGAGCGCATGAAGAGCAACAAGTTTCGGTTGTCGATC
GATGATGCCAACGTCATTCAGGTGCTCCACACCAATGCCGGTTTCCTGGG
CCAGGAGGATAACTCCGGGCATCTAAACTACTGTGTCAACGGTGGACGCA
TCCAGCCGTTCTGCAAAGGAAATCCAATCAGAAAAATCGCGATGTTCGCA
CTTCTTGAGCATCTGCTACTTGGCCACTGCCACATTTAAAACACAATAAG
TTCATGGGAGTACCGTGTCCCAATGGCTGCCTGAATTCTTAGTGGAATCC
AAGAGCTGCCCGTGAGCGGCAAGTGAATCCCTTTCGAGTTCGCCTCCCTC
GATTAAGGAGTACCACATAGCCAACGATGCCCCCGATGCGCCCGAGCTGC
ATTGCATGAATGTGCCCGTATGCAGGCACTGCCTTTTACGATGCGCAAGC
TTTCTAGACCATCGTTTGGCCGCCGGGCCAGGTATGGTCCTATCCATAAT
CTAACTTA
UFO10105.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6431-RB | 1689 | CG6431-RB | 585..1622 | 9..1045 | 4715 | 97.7 | Plus |
| CG6431-RC | 1191 | CG6431-RC | 275..1124 | 197..1045 | 3775 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10727833..10728269 | 345..781 | 2185 | 100 | Plus |
| 2L | 23513712 | 2L | 10727605..10727753 | 197..345 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 10726300..10726443 | 53..196 | 720 | 100 | Plus |
| 2L | 23513712 | 2L | 10728345..10728555 | 775..988 | 630 | 91.6 | Plus |
| 2L | 23513712 | 2L | 10726099..10726144 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:41:43 has no hits.
UFO10105.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:49 Download gff for
UFO10105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6431-RB | 560..1583 | 9..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:00 Download gff for
UFO10105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6431-RB | 585..1608 | 9..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:39 Download gff for
UFO10105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6431-RB | 585..1608 | 9..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:39 Download gff for
UFO10105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10726099..10726144 | 9..54 | 100 | -> | Plus |
| 2L | 10726302..10726443 | 55..196 | 100 | -> | Plus |
| 2L | 10727605..10727753 | 197..345 | 100 | -> | Plus |
| 2L | 10727834..10728268 | 346..780 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:00 Download gff for
UFO10105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10726099..10726144 | 9..54 | 100 | -> | Plus |
| arm_2L | 10726302..10726443 | 55..196 | 100 | -> | Plus |
| arm_2L | 10727605..10727753 | 197..345 | 100 | -> | Plus |
| arm_2L | 10727834..10728268 | 346..780 | 100 | -> | Plus |
