UFO10106.5prime Sequence
1086 bp (971 high quality bases) assembled on 2011-11-01
> UFO10106.5prime
CAGTCGACATGATACCAAAAAAGACGACGGTTAAGGATTCACACATTGTG
AAAATAGCCGTGGAGCGAGAGGACCATATAGCGCAGTTGATAAATCTGGA
TCAAAGGCATCCGCTGGCAAGTAAAATCCAGGAAATTTGCAATGGTTGGT
CCATCAGCGATCACCAGAACTATGCACTCCAGTTCTACGAGCCCACTAAC
CGAAAGTACGTGACCGAAAAGAATCGCAATGAGATCAAGAATGGCTCCGT
ACTGCAGCTGCAGTATTCGCCATCCAAGACTGCCTGCGATGCCATGGAGG
TGCTGCTCAATGGCAGTCCACAGGAGAAGGCGCTGCGTCTAAAGGAGCTC
ACTTCCCTAAGCACCGATCACACATTTGCCCTGGAGTTCATCAAGGAGAA
GGGTCTCGACACACTCATTAAGATGATTGAGGATGGCGGCCAGACCAACG
AAGACATTCTGAAATACAGCCTGGCCAGCTTTGTGGAGCTGATGGAGCAC
GGCACGGTGTCCTGGGAGGTGCCGGAAAACTCATTCGTGGCCCGCAACAT
TGAGATCGTGCGAAACTTTCAGAAATATCCTACGAACTGTGGTGAGAGCG
CCCTGTCCAACTTGGAGAACATTGTTATGTGCAGCAATAAACATGTGCTT
GTTGCCGAGGACATCAAGCTGCAGGATATTCTCCGATTGCTTCAGGATGT
CAATTCGCCGGTGATGCGACAAAATGCCATAGCCCTGCTGAACGCTCTGT
TCGTCAAAGCAGACGAGGGCCGCCGCAGGACCATTGCTCAAACTATTAGT
GCCAAGCAGTTCCGCCTGCCCTTATCGGCAATGGACTGGGCACAGAGATG
ACCCCACCAGCTGTACGTGCTGCAACGTTGACTCTCGGCCTGTTGGAGAA
GCGCATGCGTATGAAGATGAACGCGCAGACCAGGACGCGCACGAGAGATC
AAGAGCTGCGCGCATTGCCTTCGACGATAATACCAACGCTTGAATCAAAC
GACGATCAATCCGTCTTGCGGTGGCTCCGACTGCATGTCACTTCTCGCAT
AACTACAAAGCTGGCTTCAAGTGCAATTTACCTTGC
UFO10106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ced-12-RA | 2586 | CG5336-RA | 114..1196 | 9..1074 | 4910 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12098347..12099231 | 112..991 | 4050 | 99 | Plus |
| 2L | 23513712 | 2L | 12097951..12098064 | 9..122 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:41:50 has no hits.
UFO10106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:49 Download gff for
UFO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ced-12-RA | 109..1205 | 9..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:06 Download gff for
UFO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ced-12-RA | 114..1210 | 9..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:42 Download gff for
UFO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ced-12-RA | 114..1210 | 9..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:42 Download gff for
UFO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12097951..12098062 | 9..120 | 100 | -> | Plus |
| 2L | 12098356..12099340 | 121..1086 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:06 Download gff for
UFO10106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12097951..12098062 | 9..120 | 100 | -> | Plus |
| arm_2L | 12098356..12099340 | 121..1086 | 97 | | Plus |
