UFO10109.5prime Sequence
1110 bp (968 high quality bases) assembled on 2011-11-01
> UFO10109.5prime
CAGTCGACATGGATCTCATACAAGAGCCAAGATTGCCGGTGAACGAATGT
CAGGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCATCCAGTAG
CACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATA
CGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAGGTGGTTAAATTT
AGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGG
TGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAA
AATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGAT
TACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAG
AGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAG
CAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGC
TTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCT
GCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGG
ACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCC
GAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGAAGTT
CAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCACAAAG
CCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCATGAG
ATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATCATGA
GGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGCGCCCAATC
TAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGTATGCACTC
GAAAGCTGAATGTGATGTGCGAGGAGGCGCTGTGCGTTCAATCTCTCTGT
AGAACAGCAGCCGAAACCCTAATATAGCTGATCTCCACAGGTTGCGATCA
ATTGAAAGGCCAAACGATAGATTTCATAAATCTCTATGCCAACCGATGTG
ATGGCAACGC
UFO10109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RF | 3856 | CG12537-RF | 510..1610 | 8..1108 | 5200 | 98.6 | Plus |
| rdx-RA | 2962 | CG12537-RA | 510..1610 | 8..1108 | 5200 | 98.6 | Plus |
| rdx-RB | 2311 | CG12537-RB | 549..1629 | 28..1108 | 5100 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13969909..13970206 | 762..465 | 1475 | 99.7 | Minus |
| 3R | 32079331 | 3R | 13969608..13969790 | 941..759 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 13970278..13970440 | 466..304 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 13970950..13971104 | 184..30 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 13970505..13970634 | 307..178 | 635 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13969399..13969541 | 1081..940 | 385 | 92.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:41:56 has no hits.
UFO10109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:50 Download gff for
UFO10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RA | 502..1609 | 1..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:10 Download gff for
UFO10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RA | 504..1611 | 1..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:45 Download gff for
UFO10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RA | 504..1611 | 1..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:45 Download gff for
UFO10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13969909..13970204 | 467..762 | 99 | <- | Minus |
| 3R | 13970278..13970439 | 305..466 | 100 | <- | Minus |
| 3R | 13970508..13970629 | 183..304 | 99 | <- | Minus |
| 3R | 13970952..13971102 | 32..182 | 100 | <- | Minus |
| 3R | 13969397..13969539 | 942..1082 | 92 | <- | Minus |
| 3R | 13969608..13969786 | 763..941 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:10 Download gff for
UFO10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9795119..9795261 | 942..1082 | 92 | <- | Minus |
| arm_3R | 9795330..9795508 | 763..941 | 100 | <- | Minus |
| arm_3R | 9795631..9795926 | 467..762 | 99 | <- | Minus |
| arm_3R | 9796000..9796161 | 305..466 | 100 | <- | Minus |
| arm_3R | 9796230..9796351 | 183..304 | 99 | <- | Minus |
| arm_3R | 9796674..9796824 | 32..182 | 100 | <- | Minus |
