UFO10112.5prime Sequence
663 bp (658 high quality bases) assembled on 2011-11-01
> UFO10112.5prime
CAGTCGACATGTTCACAGTGGATGCAAGCGAAGGATCATCAGTTGTAAAC
GAGACTCCATTAAAAAGCCAATTCCACGATCAGAAGTTGGTTGAGCACTT
TTGCCGGCAGACGCAGCTGCTCAAGCTGGTCCAGGTCTCCTCTGGCCGCT
TTGTGGCGAACTATATGAGCTCCCGGCGGCCAGAGGACCTGCTGGCCCCC
ATCCAGCTGCGCCTGGACTTCGAATACCGGCAACTACTCGATATCTCACC
GCAACTACTGCAGCTCATCGTCGAGGAACCGCTGCAGTTTCAAGAAGCGG
TCCGCTACTCGGTTTATGGCTTGATCCGCTCACATCTCAAGGACGCTGGC
CTGAAGCCCATCGATATCAACCAGCTGCACGCCCACTGGCGCCTGGTGGG
ACTGCCCTTTACGCCGGGCCTGCAGTTTCGAGCCGCGGGACCAGTTGACC
CGGCTGGGCTTGTCCCAGATCCGGGGCATCCTAGCCGCTTTCACGCCGCA
AGAAACACTGGTCCTACAATCGATCTGGTACTGCGGCAGTGGCTGTATGC
GAAATGCCATACAGACCAGCTCAACAGATGCACCCTTTTGTTCGAGCTGC
TCGCGGCCCATGAGTGATACAAGTGCGCCGACACGACTGTGTGTCGTATT
GCTGCCCATTACA
UFO10112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-217-RC | 5005 | CG33935-RC | 128..735 | 9..617 | 3020 | 99.8 | Plus |
| mei-218-RC | 5005 | CG8923-RC | 128..735 | 9..617 | 3020 | 99.8 | Plus |
| mei-218-RD | 6125 | CG8923-RD | 212..652 | 71..512 | 2185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17142267..17142707 | 512..71 | 2160 | 99.8 | Minus |
| X | 23542271 | X | 17141694..17141761 | 580..513 | 340 | 100 | Minus |
| X | 23542271 | X | 17142802..17142863 | 70..9 | 310 | 100 | Minus |
| X | 23542271 | X | 17141445..17141482 | 617..580 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:42:11 has no hits.
UFO10112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:51 Download gff for
UFO10112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-217-RC | 123..746 | 3..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:20 Download gff for
UFO10112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-218-RC | 123..746 | 3..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:53 Download gff for
UFO10112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-218-RC | 123..746 | 3..626 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:53 Download gff for
UFO10112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17142802..17142868 | 3..70 | 95 | | Minus |
| X | 17141694..17141761 | 513..580 | 100 | <- | Minus |
| X | 17142267..17142707 | 71..512 | 99 | <- | Minus |
| X | 17141434..17141481 | 581..626 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:20 Download gff for
UFO10112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17035727..17035794 | 513..580 | 100 | <- | Minus |
| arm_X | 17035467..17035514 | 581..626 | 91 | <- | Minus |
| arm_X | 17036300..17036740 | 71..512 | 99 | <- | Minus |
| arm_X | 17036835..17036901 | 3..70 | 95 | | Minus |
