UFO10113.5prime Sequence
1112 bp (945 high quality bases) assembled on 2011-11-01
> UFO10113.5prime
CAGTCGACATGCTGCTGCAGCGGAACAAATTAGGCAGCGTACGGCCACCA
AAGCGTTGCAGGAGCGACATGGATAACACCTCCACCTCGGACATTGTCAT
CATCAATGGCAACTCGCATCCGGATCTGGCCAATATGGTGGCCGAGCGTA
TGGGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGTCCAATAGGGAG
ACTATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGACATCTACATCAT
CCAAACGGGCACAAAGGATGCCAACAATAATATCATGGAGCTTCTGATTA
TGGCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCGTGGGAGTGATT
CCATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAGCGCGGCTGCAT
TGTGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGGCCTGACGCACA
TCATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCTTCTTTGACATA
CCCGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAATATATTCAAGA
GAGCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCGCAATCCGGGCG
TGGCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTCTTGGCCTGGCC
GTCATCCATGGCGAACAGAAGGAAACGGATGCCGATGAGGTCGACGGTCG
GTACTCCCCTCCACCGACCAGAAACTCTACTCCACAACACGCCCCAAACC
AGCAGCGCCCGCCAGCGAACCACCTCGGTTTCAGTGGGTGTCCCGGAGCA
CAATGTCAAGGTCAAGCCACCGCTGACCATTGTGGGGAGAATGTCAGTGG
ACGCATCGCCATCATGGTGGATGACCTGATCGACGATTGTGCAGGCCTTC
GTGGCCGCCGCTGAAATGCTGAAAGAAGAACGGTGCCTGCAAGAATAAAA
CGTGCTGGCCACGCATGGTCTGCTTAACTTCAGATGCACCGCGTCAGCTG
GAACGAGTCGCCCAATCGAATGAAGATCGTGTAAACAATTACCATCCAAC
ACAGAAGATCCAAAGCTGCAGTGCCCAAAAGAATCAAGAACGAATCGAAC
TCTCCAATTCTG
UFO10113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-RG | 1584 | CG2246-RG | 263..1355 | 2..1112 | 4805 | 96.8 | Plus |
| CG2246-RB | 1616 | CG2246-RB | 155..1247 | 2..1112 | 4805 | 96.8 | Plus |
| CG2246-RK | 1508 | CG2246-RK | 73..1139 | 28..1112 | 4690 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30595040..30595328 | 554..266 | 1445 | 100 | Minus |
| 3R | 32079331 | 3R | 30595389..30595630 | 266..25 | 1195 | 99.6 | Minus |
| 3R | 32079331 | 3R | 30594818..30594984 | 721..555 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 30593704..30593851 | 870..720 | 565 | 94.7 | Minus |
| 3R | 32079331 | 3R | 30593497..30593636 | 1014..869 | 390 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:42:18 has no hits.
UFO10113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:52 Download gff for
UFO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RB | 121..1114 | 1..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:24 Download gff for
UFO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RB | 154..1147 | 1..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:55 Download gff for
UFO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RB | 154..1147 | 1..1002 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:55 Download gff for
UFO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30593705..30593849 | 722..869 | 95 | <- | Minus |
| 3R | 30594818..30594984 | 555..721 | 100 | <- | Minus |
| 3R | 30593489..30593635 | 870..1025 | 91 | <- | Minus |
| 3R | 30595040..30595328 | 266..554 | 100 | <- | Minus |
| 3R | 30595390..30595626 | 29..265 | 100 | <- | Minus |
| 3R | 30601201..30601227 | 1..28 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:24 Download gff for
UFO10113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26421112..26421348 | 29..265 | 100 | <- | Minus |
| arm_3R | 26426923..26426949 | 1..28 | 92 | | Minus |
| arm_3R | 26419427..26419571 | 722..869 | 95 | <- | Minus |
| arm_3R | 26420540..26420706 | 555..721 | 100 | <- | Minus |
| arm_3R | 26420762..26421050 | 266..554 | 100 | <- | Minus |
| arm_3R | 26419211..26419357 | 870..1025 | 91 | <- | Minus |
