UFO10115.5prime Sequence
1061 bp (963 high quality bases) assembled on 2011-11-01
> UFO10115.5prime
CAGTCGACATGCACTGCGCTTTGTATAACTCGTGTCCGGTGGCACACAAA
CATCTGCCCACCCTGGACATTGAACCCAGTGACTATGTGCATGAAGTTCC
ACCTCCTGGCGAAATCGTGCGTCCTCCAATACAGTTGGGAGAGACATACT
ACGCTGTTAAGAACAAGGCTATTGCCAGCTGGGTGTCCATAAAGGTAATC
GAGTTTACAGAGAGCACCGCCATCAACGGAAACACGATGAAGAGCTACAA
GATTAGGTACCTCAACACTCCGTACCAGATGATCAAGACAGTGACGGCCA
AGCACATTGCCTACTTCGAACCACCGCCAGTGCGACTGACCATTGGTACC
CGCGTGATTGCGTACTTCGATGGCACCACTTTGTCGCGGGGCAAGGATAA
GGGCGTGGTGCAGAGCGCCTTTTATCCAGGCATCATCGCTGAGCCGTTGA
AGCAGGCCAATCGCTACCGCTACCTAATATTCTACGACGATGGGTACACT
CAGTACGTTCCGCACCGCGATGTCCGTCTAGTTTGCCAGGCTTCCGAGAA
AGTGTGGGAGGACGTACACGCCGCATCGCGCGATTTCATACAGAAGTACG
TGGAGAAGTACTCCGTGGATCGTCCCATGGTGCAATGCACCCGGAGACAA
AGTATGACCACTGAATCGAACGGGACCTGGCTGTACGCGCGCGTCATTGA
CATCGACTGCAGCTTGGTGTTGATGCAGTTTGAGGGCGACAAAAACCATA
CGGAGTGGATATACAGGGGTTCATTGCGCTTGGGTCCTGTCTTCAGGAAA
CCCAGAACAATATGAACAGTTCAAGCGCACAGCAGCTGCGTGTCCCAAGA
CGCACGGAGCCCTTTATTCGGTACACCAGGAGATGGAGTCCAGCAGCAAG
TGACAGCAGATGCGTGCCTTTGCCGCAGAGCAGCGCTCGCAAATACGCAT
ACGTGACTCCGCACACGAGACCATGCAGTCACGTAGAAGCTGCACTAAAT
CGATCTGACAGACGCAGCTGTTCATAGCAGATCGTCATGATGCAATGCAT
GCTAGTCCTGA
UFO10115.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| egg-RA | 3937 | CG12196-RA | 1349..2283 | 9..936 | 4480 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24777467..24777973 | 850..345 | 2455 | 99.4 | Minus |
| 2R | 25286936 | 2R | 24778033..24778291 | 347..89 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 24778344..24778424 | 89..9 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 24777331..24777408 | 924..851 | 225 | 94.9 | Minus |
Blast to na_te.dros performed 2014-11-27 00:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 2822..2852 | 793..823 | 110 | 83.9 | Plus |
UFO10115.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:53 Download gff for
UFO10115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1354..2296 | 1..936 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:29 Download gff for
UFO10115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1341..2283 | 1..936 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:58 Download gff for
UFO10115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| egg-RA | 1341..2283 | 1..936 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:58 Download gff for
UFO10115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24777331..24777408 | 851..924 | 94 | <- | Minus |
| 2R | 24777467..24777972 | 346..850 | 99 | <- | Minus |
| 2R | 24778035..24778290 | 90..345 | 100 | <- | Minus |
| 2R | 24778344..24778432 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:29 Download gff for
UFO10115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20664854..20664931 | 851..924 | 94 | <- | Minus |
| arm_2R | 20664990..20665495 | 346..850 | 99 | <- | Minus |
| arm_2R | 20665558..20665813 | 90..345 | 100 | <- | Minus |
| arm_2R | 20665867..20665955 | 1..89 | 95 | | Minus |
