UFO10117.5prime Sequence
1037 bp (942 high quality bases) assembled on 2011-11-01
> UFO10117.5prime
CAGTCGACATGGAACCCTTCTTCGCGAGCTGTGACCAGAAAGTGAGAGAT
GGTGGCTGGATGGTGATCGCCTATAGATTCGATGGCAGCGAGGACTTCAA
CAAGGATTGGCAGAACTATAAGGCCGGTTTTGGCGCTTTAAACTCGGAGT
TCTTTATCGGATTGGATAAGCTGCACAGGTTGACCAACAGTGAGCACCAC
GAGTTGCTCATCATAATGAAGAAGAAAAGTGGAGAGGAACGTTTCGCGCT
GTACGATCACTTCAGTATTGGCAGTGAATCGGAAAAGTATCTTCTATATG
TACTTGGTGCCTACAAAGGTGATGCTGGTGATTCGCTACGTTACCATGCG
GGCAAGAAGTTCACCACATTCGATCAGGATAACGACGATAATGGCCAAAA
CTGCGCCAGGACGCATGCAGGTGCCTGGTGGTATGGAAGGGAGTGCTTCG
AGAGCAACTTGTTTGGTACATTCCAGTCGAAGTACGGACAGGAGATTGGC
TATTTCAAGGGCATCCTGTGGAAATCCTTCCTGCCAGGACCCACTGGCTC
GCTTAGCTATGTCCGCATGCTCATCCGGCCGCTCAAGAAACAGGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTATTCATTAAGCATTCTGCGACATGCAGCCATCACAA
ACGGCATGATGACTGATCGCAGCGCATCAGCAACTTGTCGCCTTGCGTAT
ATATTGCCAATGTGAAACGGGGCGAAGAGTTGTCTATTGTCACGTTTATC
AACTGTGACTCACCAAGAATGGCTGAACGAAACAATT
UFO10117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1791-RC | 1176 | CG1791-RC | 519..1103 | 9..593 | 2925 | 100 | Plus |
| CG1791-RB | 1193 | CG1791-RB | 536..1120 | 9..593 | 2925 | 100 | Plus |
| CG1791-RA | 1179 | CG1791-RA | 522..1106 | 9..593 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9963725..9964170 | 454..9 | 2230 | 100 | Minus |
| X | 23542271 | X | 9963526..9963666 | 593..453 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:42:31 has no hits.
UFO10117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:53 Download gff for
UFO10117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1791-RB | 530..1120 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:32 Download gff for
UFO10117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1791-RA | 516..1106 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:01 Download gff for
UFO10117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1791-RA | 516..1106 | 1..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:01 Download gff for
UFO10117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9963526..9963664 | 455..593 | 100 | <- | Minus |
| X | 9963725..9964175 | 1..454 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:32 Download gff for
UFO10117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9857559..9857697 | 455..593 | 100 | <- | Minus |
| arm_X | 9857758..9858208 | 1..454 | 99 | | Minus |
