UFO10118.5prime Sequence
1065 bp (977 high quality bases) assembled on 2011-11-01
> UFO10118.5prime
CAGTCGACATGATCAATGAGCTATCCGCTCCTAAGCTTAAGCTTGTATTC
ATTAATGTATTTTCGATTTTGCACAGTACCACTTATTTGAATGTGTACCG
CTTATATGCAGACTTAAAAAATGTTAAAGCTGGCGTGGATGGGTCTAATG
AGGAGCTTTGGATCAGGGAAATCTTTACATTCCTCATCAGTGCTCTCATA
GTGATTCGCTTTTGTCTATGCTTCGTAGGATTGGCTTCTAACATTGTGGC
CATATACCCAATTCTAACAAATTCGCAAGCTGAGATGCTTATGCCTACCA
TTATAGTGCAGGCCATTGACAAAGTCATTCTAAATCTATACGAGATTATT
TTGGGCTACGGCAGCTTGTGCTATCTCTATCCTGAAAGTACGGCTGTTTT
CATCTTCTTCCTTATACAGATGGGAGCCAAGATTGTCTGCAGCATCTCTG
TCTTGAATATTTATTCGGACCATCACAATCACTTGGCAACTCTAGTTTCC
TTCAACGAGGAATCACATAGCTTGGGACCAGACAGTGTAGAAGAAATCGA
ATTGGGGAACCAAAACTTGGATTTTTCCGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGATCGCCAGCGCATCAGCACTTGTCGCTTGCGTATAATATTTGCCC
ATGTGAAAACGGGGCGAAAGAAGTTGTCATATGCCACGTTAAATCAAACC
TGTTGACCTCACCAGGATGGCTGAAAACGAAAACATTTTCCATAACCGTT
AGATCGCAGTTCCGT
UFO10118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34307-RB | 718 | CG34307-RB | 76..645 | 9..578 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11897657..11897901 | 9..253 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 11897961..11898162 | 254..455 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 11898223..11898346 | 455..578 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:42:37 has no hits.
UFO10118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:54 Download gff for
UFO10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34307-RB | 74..650 | 6..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:36 Download gff for
UFO10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34307-RB | 74..650 | 6..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:06 Download gff for
UFO10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34307-RB | 74..650 | 6..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:06 Download gff for
UFO10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11897655..11897901 | 6..253 | 99 | -> | Plus |
| 3R | 11897961..11898161 | 254..454 | 100 | -> | Plus |
| 3R | 11898223..11898351 | 455..585 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:36 Download gff for
UFO10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7723377..7723623 | 6..253 | 99 | -> | Plus |
| arm_3R | 7723683..7723883 | 254..454 | 100 | -> | Plus |
| arm_3R | 7723945..7724073 | 455..585 | 97 | == | Plus |
