UFO10119.5prime Sequence
958 bp (846 high quality bases) assembled on 2011-11-01
> UFO10119.5prime
CAGTCGACATGGAGCTACCGAAGGAGTTATCCGTTGCGGAGATCCGTAAT
TACATGTTGGCAAACGAGTGCAAGGTGACAAATCACGCCTTGGTGAAGCA
CTTCAAGAAATTCCTAACTCACCCGCAGTCGCAAAATGAGGCTCGCAAGC
GATTCAAGACCTATGTCACACTGCTGTCCACCATCAAGAACGAGAACAAT
CAGAAGTTTTTGATATTGCGCAAGAAATACGTAAACGAATGCCCCACGGA
TGAGGTTGTGGAGCGCGCGGTGGCCGCCGCATCTGGTATTCCGGAGCCCT
CAAGTCCCGGCGGCGCATCTCTTAACTTTGACTCGCCCATGAGGCAGCCA
CCGCCATATAAACCGCCGCCCATGGTCACCTCTCCGCCAGCCGTTTCCAT
TGCCAAGGAGCACCAGGAGAATTACCAGGAGTGCGTGGACGAATTCACGG
CTGCCATAAAGCGCATTGAGCCAGCACGCTTGGAGAGGCGAACGTCGGTC
AAGTCCGAGGATCTGGATCAGCAGGAGAAGCCGGAGAAAACGTCTCGATC
GAATTCCATCGATGTGATCGACAACAAGGAGAACATACCACGTTTCTCCT
TCTCCTCGGAGGCCTCCTCGGCGTCCAGCACTTCCATTGAAAAGCCGGAG
ATGGCTGATCCCACAGCTCCCGCCGCCGTAGGCGATGTGGCCGAGAATCC
CATCAGCGTGAAGGAGGCCACGCGCAATCTAATCGGATGGCGTCTGAGAG
AGCTAAATCATATCGCCGCAGCTTGAGAGCAGAGAGCATTATCGAGAGAG
ATCACGGAGTACGCTGCGCATCCAAGCAAGATGATAGTCTCGATGCAGTA
TACAGATGCAATGCATGTCGATGATGTGCGCGTACTATGCACGATGATGA
GGAGCTGTGTTGCGAGCACGCACAACTGACTGGGGCCTCACGAGCACCAC
GCGCATGA
UFO10119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sowah-RI | 2314 | CG10632-RI | 105..870 | 9..769 | 3690 | 99.2 | Plus |
| sowah-RG | 2749 | CG10632-RG | 105..870 | 9..769 | 3690 | 99.2 | Plus |
| sowah-RH | 2360 | CG10632-RH | 105..870 | 9..769 | 3690 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12571588..12572200 | 747..136 | 3000 | 99.7 | Minus |
| 3L | 28110227 | 3L | 12572307..12572438 | 140..9 | 645 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:42:44 has no hits.
UFO10119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:55 Download gff for
UFO10119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowah-RG | 78..855 | 1..773 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:31:42 Download gff for
UFO10119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowah-RH | 98..875 | 1..773 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:11 Download gff for
UFO10119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sowah-RH | 98..875 | 1..773 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:11 Download gff for
UFO10119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12571557..12572200 | 136..773 | 98 | <- | Minus |
| 3L | 12572312..12572444 | 1..135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:31:42 Download gff for
UFO10119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12564657..12565300 | 136..773 | 98 | <- | Minus |
| arm_3L | 12565412..12565544 | 1..135 | 97 | | Minus |
