UFO10127.5prime Sequence
1080 bp (932 high quality bases) assembled on 2011-11-01
> UFO10127.5prime
CAGTCGACATGAGTCCTGAAATATCCGGCTTCCGGCGGTTCCTGCATTGG
GGCCCCATTACCGCCCTTAGCATCATCAAGTGCATAACGCTGACAACGCT
CTATATGAACTCGATGTGGTGGCCGCCAAATAAATCATTCGCCGGATTCG
CCCACCAGGCCCTCTTCCTGCTCCTTTCCACGCTGGCCACATTCAATTAC
GTCATGGCCACTTTGACTGGTCCCGGACTGATGCCAAAACAGTGGCATCC
CAAGGATCCCAAGGACGCCCAGTTCCTGCAGTACTGCAAAAAGTGCGAGG
GCTACAAGGCACCACGCTCCCATCATTGTCGCAAGTGTGATCGCTGCGTC
AAGAAGATGGACCATCACTGCCCATGGATCAATCACTGCGTTGGCTGGGC
CAACCACGCGTACTTCACATACTTCCTGCTCTTCTCCATCCTGGGCAGCC
TGCAGGGCACCGTGGTGCTATGCTGCTCCTTCTGGCGGGGAATCTACCGC
TACTACTATCTCACCCACGGATTGGCGCACTTGGCTAGCGTGCAGTTCAC
TCTGCTCAGCATCATCATGTGCATTCTGGGCATGGGCCTGGCCATCGGTG
TCGTCATTGGCCTGAGCATGCTGCTGTTCATTCAGCTGAAGACGATTGTA
AACAACCAGACGGGCATAGAGATCTGGATAGTGGAGAAGGCCATTTACCG
CCGATATAGGAATGCCGACTGCGACGACGAGTTCCTATATCCCTATGATT
TGGGCTGGCGGGCAAATTTGCGACTGGTATTCAATGACGAGTGCCAAAAG
CGAGGCGATGGCATCGAGTGACCAGTGGTGGGAGGGTTGTGATCAGTATA
CATTGACGCGCGAGCAACTGGCGCAGATGGAGGAAAAACGAGCTCGAACC
CGCACCTTCAATGCACAAGGCCAGTGACTGGCCCGTGGCTGCCGATCTTT
TCGCAGGTTGGCGTGTTTGTGTGGCCGCTCCTGCCTCGATGAACCCACGC
ATCAGCCCTGCGACCAACCGACATGATTTAGGTCACTCGCTCCGCAACAC
TGGCTGTCGGCGAAGCGATGCCTTCGAGAC
UFO10127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-RA | 1679 | CG5196-RA | 97..1154 | 9..1063 | 4900 | 98 | Plus |
| CG5196-RB | 2023 | CG5196-RB | 502..1498 | 70..1063 | 4595 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12410460..12410980 | 337..858 | 2530 | 99.4 | Plus |
| 3R | 32079331 | 3R | 12409255..12409440 | 70..255 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 12411034..12411218 | 858..1041 | 540 | 89.8 | Plus |
| 3R | 32079331 | 3R | 12410273..12410358 | 253..338 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 12408412..12408473 | 9..70 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:43:09 has no hits.
UFO10127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:58 Download gff for
UFO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 91..1165 | 9..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:09 Download gff for
UFO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 97..1171 | 9..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:25 Download gff for
UFO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 97..1171 | 9..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:25 Download gff for
UFO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12410275..12410356 | 255..336 | 100 | -> | Plus |
| 3R | 12408412..12408472 | 9..69 | 100 | -> | Plus |
| 3R | 12409255..12409439 | 70..254 | 100 | -> | Plus |
| 3R | 12410460..12410980 | 337..858 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:09 Download gff for
UFO10127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8234134..8234194 | 9..69 | 100 | -> | Plus |
| arm_3R | 8234977..8235161 | 70..254 | 100 | -> | Plus |
| arm_3R | 8235997..8236078 | 255..336 | 100 | -> | Plus |
| arm_3R | 8236182..8236702 | 337..858 | 99 | -> | Plus |
