UFO10128.5prime Sequence
1060 bp (968 high quality bases) assembled on 2011-11-01
> UFO10128.5prime
CAGTCACATGGGGCGCATATGGAGTTTACTCTTCGTTAGCAGTTTGCTGC
ACACTCAGAGCCAAAGTTTTCGCGTTCTGGCTATAAATGAGGCCACTTGC
TCGTCGGACCAATTCCGTTGCGGGAATGGCAACTGCATACCGAACAAATG
GCGCTGCGATCAGGAGAGCGATTGTGCCGATGGCTCCGATGAAGCCAACG
AATTGTGCAGAGCTCGAACCTGTTCACCGGATGAATATGCCTGCAAGAGT
GGCGAGGGGCAATGTGTTCCTTTGGCCTGGATGTGCGACCAGAGCAAGGA
CTGCAGCGATGGCTCCGACGAGCACAACTGCAACCAGACCTGTCGTGCCG
ACGAGTTCACCTGCGGCAATGGACGGTGCATCCAGAAGCGATGGAAGTGC
GACCACGACGACGACTGCGGCGATGGATCCGACGAGAAGGAGTGCCCAGT
GGTGCCCTGCGACTCCGTGGCGGAGCACACCTGCACGAATGGAGCCTGCA
TCGCCAAGCGGTGGGTCTGCGACGGTGATCCGGACTGCTCCGATGGCTCC
GATGAGCGGTCCTGTGCGAATGTGACCAAGACGACCACGCCCTGCTTATC
GCACGAATACCAGTGCAAGGATCGCATCACCTGCCTGCATCACAGCTGGC
TCTGCGATGGTGACCGCGACTGTCCCGATGGCGACGATGAGCACACAGCC
AACTGCAAGAACGTCACCTGCCGGGCGGACCAGTTCCAGTGCGGCGATCG
CAGCTGCATTCCAGGACATCTCACCTGCAACGGCGACAAGGACTGCGCCG
ATGGCAGCGACGAACGGGATTGCGGATTGAGTCTGAGTCTGGGGATCAAC
CCAGGGAGGATGCAACGCAACCAGCGAATTCGACTGCGGTTGGAGGTCAG
TGCGTTCCACTCTCGAAGTCTGCGACAAGAGGAATGGATTGTCCCGGATG
GCGAGGACGAGCCCGGCAGAAGTGCGTGATAACGAGTGCGCCTCGAAAGA
CCGGAGCTGCATGCACCGTTGCATCGATCTGAAGTTGGCCACCACTTGCG
AAATGCCCGG
UFO10128.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR1-RG | 3546 | CG31094-RG | 245..1288 | 8..1052 | 4820 | 98 | Plus |
| LpR1-RD | 3369 | CG31094-RD | 245..1288 | 8..1052 | 4820 | 98 | Plus |
| LpR1-RL | 3798 | CG31094-RL | 755..1717 | 89..1052 | 4445 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25745915..25746393 | 1038..559 | 1855 | 95.7 | Minus |
| 3R | 32079331 | 3R | 25747007..25747233 | 559..333 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 25748103..25748225 | 332..210 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 25749269..25749390 | 210..89 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 25752061..25752142 | 89..8 | 380 | 97.6 | Minus |
| 3R | 32079331 | 3R | 25709411..25709513 | 439..337 | 260 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:43:14 has no hits.
UFO10128.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:58 Download gff for
UFO10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RG | 239..1292 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:13 Download gff for
UFO10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RD | 239..1292 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:28 Download gff for
UFO10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR1-RD | 239..1292 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:28 Download gff for
UFO10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25749270..25749389 | 90..209 | 100 | <- | Minus |
| 3R | 25752061..25752148 | 1..89 | 93 | | Minus |
| 3R | 25747007..25747233 | 333..559 | 100 | <- | Minus |
| 3R | 25748103..25748225 | 210..332 | 100 | <- | Minus |
| 3R | 25745906..25746392 | 560..1046 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:13 Download gff for
UFO10128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21571628..21572114 | 560..1046 | 96 | <- | Minus |
| arm_3R | 21572729..21572955 | 333..559 | 100 | <- | Minus |
| arm_3R | 21573825..21573947 | 210..332 | 100 | <- | Minus |
| arm_3R | 21574992..21575111 | 90..209 | 100 | <- | Minus |
| arm_3R | 21577783..21577870 | 1..89 | 93 | | Minus |
