UFO10130.5prime Sequence
1091 bp (1003 high quality bases) assembled on 2011-11-01
> UFO10130.5prime
CAGTCGACATGCCGGCGGAAATTAAACCATCCGCGCCCGCTGAGCCGGAA
ACGCCGACCAAGAGCAAACCCAAGTCCAGCTCATCCTCGCACGGAAAGCC
TGCCCTAGCACGAGTCACCCTGCTGGATGGCTCCCTTCTGGACGTGTCCA
TTGATCGCAAAGCCATTGGCCGTGATGTGATCAACTCAATCTGCGCCGGT
CTGAACCTCATCGAAAAGGACTACTTTGGTCTGACCTATGAGACGCCCAC
AGATCCGCGCACTTGGCTGGATCTGGAGAAGCCGGTATCCAAGTTCTTCC
GCACGGACACTTGGCCTCTCACCTTCGCCGTCAAGTTCTATCCGCCGGAG
CCATCGCAGCTGAAGGAGGACATCACGCGCTACCATTTGTGCCTGCAGGT
GCGCAATGACATCCTGGAGGGTCGACTGCCCTGCACATTCGTCACCCACG
CTCTGCTCGGATCCTACTTGGTGCAGTCGGAGATGGGCGACTACGATGCA
GAGGAAATGCCCACCAGGGCCTACCTGAAGGACTTCAAGATCGCTCCAAA
TCAGACGGCTGAGTTGGAGGATAAGGTCATGGATCTTCACAAGACCCACA
AGGGACAATCGCCCGCCGAGGCTGAGCTACACTACCTGGAGAATGCCAAG
AAGCTGGCCATGTACGGCGTGGACTTGCATCCCGCTAAGGATTCTGAGGG
CGTGGACATCATGCTGGGCGTTTGTGCCTCCGGTTTGCTCGTCTACCGCG
ATAAATTGCGCATCAACCGCTTTGCCTGGCCCAAGATTCTGAAGATCTCC
TACAAGCGCCACCATTTCTACATCAAGATCCGACCGGGTGAATTCGAGCA
GTACGAATCCACCATTGGCTTTAAGCTGGCCAACCATCGTGCCGCCAAGA
AACTGTGAAATCCTGCGTGAGCACACACTTCTTCGCTGATGACCCCGAAC
GGGTCAGCAAGTCAAGATGTTCCAGTTTCGGTCACTATCGCTACAAGGGT
CGCACTCAGCGAGAGCACGAACACAACCCGTGATCGTATCTCCCTCGAGG
TTCAATTAAGGACTCTTGTCCGGACTCGTCTCAACTCAAGA
UFO10130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cora-RG | 5893 | CG11949-RG | 372..1458 | 9..1083 | 4870 | 97.6 | Plus |
| cora-RF | 5605 | CG11949-RF | 372..1458 | 9..1083 | 4870 | 97.6 | Plus |
| cora-RE | 2902 | CG11949-RE | 372..1458 | 9..1083 | 4870 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19235763..19236209 | 156..602 | 2235 | 100 | Plus |
| 2R | 25286936 | 2R | 19236485..19236650 | 755..919 | 780 | 99.4 | Plus |
| 2R | 25286936 | 2R | 19236267..19236419 | 602..754 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 19235516..19235662 | 9..155 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:43:28 has no hits.
UFO10130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:00 Download gff for
UFO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RC | 361..1420 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:20 Download gff for
UFO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RE | 363..1422 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:37 Download gff for
UFO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RE | 363..1422 | 1..1046 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:37 Download gff for
UFO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19236267..19236419 | 602..754 | 100 | -> | Plus |
| 2R | 19236485..19236789 | 755..1046 | 93 | | Plus |
| 2R | 19235763..19236208 | 156..601 | 100 | -> | Plus |
| 2R | 19235507..19235662 | 1..155 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:20 Download gff for
UFO10130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15123268..15123713 | 156..601 | 100 | -> | Plus |
| arm_2R | 15123990..15124294 | 755..1046 | 93 | | Plus |
| arm_2R | 15123772..15123924 | 602..754 | 100 | -> | Plus |
| arm_2R | 15123012..15123167 | 1..155 | 97 | -> | Plus |
