UFO10131.5prime Sequence
1077 bp (969 high quality bases) assembled on 2011-11-01
> UFO10131.5prime
CAGTCGACATGTCGGATATTCTCGCAGAAACACAAGCCGCGAACAGAGAT
TCAACAATTTGGCACCAATGGTGTCGCCTGTGCTCCAAGGAGCATCCGAC
AAATCAAAATGTATTCTTCAGGGAGGCGAAACAAAACTCCTGGGCGAGCA
CAATGGCCATGACCATTGGCAAGTACTTTTGGGTCGATATCAAAAGGGAG
GACGAGCTGAGCAATTTTCTGTGCTCCGAATGCTTCACATTGATGGACTG
CCTCATCGAGTTTTCGGAGAGGGTTCGCAAAGTGCAGATCCTTTTCAGCA
AATTGCAGTTGTTACAGTCTAATAATTTGATGGATTATGAGAAAATTCGA
GAGGACTGCGGTGTGGCAACCGATGGATGGAAGCATATAATGCTCGGAGC
CGTAGACGAAAGTCTTCCCCAGAATGACGAAGTATTCATCAGCGAGGAAC
AACCAATAGTCTGCCAAACAGAAACATCCAGTAAAATGAAAAGTGAAATC
CTAATGATACCAAATTTTTTGGTGGAAAAACAATGTCTTCAGGAAAAACA
AGACTTTCCTAAAGAGGAAGATGTTATTGAAGAAGAAATGCAAATTTCTG
GGGTGGAAGAGGAAATCCTAGAAGAAGATGTGGAAGAAGATCTTGCCGAG
GAAGAGGTTGAAACTGTGGAGGAAGAGATTGACACTGTGGGAGAAGAGGT
TGAAGCTGTGGAGGAAGAGTTGGACACCCAAGACGCTACAGATTGCTTAG
TGGAGGAAGTGGAGCACATGACAGAGGATCGCTATATCGAGGAGTCGCAG
ATTATAGAAGAAAGCCAAGTTTCAGATTTCAACATGGAAACATATGAAAT
AGTACACACAATCCGCAAAAGACCCGTAGAAACAAAAGACACCGTGAATC
TATAGAATCAAACGAGGATACCCAGGAGATATCTCCCGAGAGCATGTACG
ATGAGAGATGAAATATCAGAGTACAGCATGTATAGTGCAATATTTGCAAA
AGCGTATAGAAATCCTAAGCTAACAGCGTCCAATTGAGAGTCACAACCTG
TGACGATGTATTTGCCAGTTGGATGCC
UFO10131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6254-RA | 2006 | CG6254-RA | 71..1098 | 9..1020 | 4705 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10160262..10161026 | 948..189 | 3580 | 99.1 | Minus |
| 3R | 32079331 | 3R | 10161082..10161261 | 188..9 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:43:48 has no hits.
UFO10131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:01 Download gff for
UFO10131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 68..1095 | 9..1020 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:34 Download gff for
UFO10131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 71..1098 | 9..1020 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:49 Download gff for
UFO10131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 71..1098 | 9..1020 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:49 Download gff for
UFO10131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10160201..10161026 | 189..1001 | 98 | <- | Minus |
| 3R | 10161082..10161261 | 9..188 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:34 Download gff for
UFO10131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5985923..5986748 | 189..1001 | 98 | <- | Minus |
| arm_3R | 5986804..5986983 | 9..188 | 100 | | Minus |
