UFO10133.5prime Sequence
1075 bp (976 high quality bases) assembled on 2011-11-01
> UFO10133.5prime
CAGTCGACATGACGACGACCAGCGTGTGCAAGAGGATCTCCTCGAGCACG
GCGTCCGCTGAGTTAACCAAATCCCTCCCAGCCACACCATCATCATCATC
CCAGGGCTCGTCGTCCGTCATCTGCGAGGAGGTTTTCGACGAGGCGTGTT
TCCCCTCATCGGAGGAAATCAATGAGTATGCCTCCCTGATTGGAATCGAT
CCTCAGAAGGAACCGCATTTGCTCTATCTGGCCAAGGAAGGATTGATGGC
CGCATTGCCAACAGACTGGAAGATATGCTACTCGGAGGAGAAGAATGGCC
ATTACTACCATAATACGCGCACCAAAGAGTCCCAATGGGACCATCCACTA
GATGCCATATATCGCGATTTGGTTAATCAGGCGCGCCAGAAGCCTTTGGA
CACGGGTTCGGTGGGGGATAACGATGATCTGTCGCAACTGGACTCCGGAA
TACGCAGCATGCAGGGTATCGATGATATTCCATCGCCGGGTCCACTGCCC
CTGAACAGTTTGGCCCGGAAATGGTCGGTGGCCAGCAAGGCCAGCTTATT
TAGTAGTGCCAAGAGTCGATTTTTGGAATCTGGATCCAAGGATATGGGTC
GATTGCATCAGCTTGGCTTCGAGGTGACCAAGTCAAAGCCACAAATAGCG
AATAAACCCGCGCCCACTAGTCAAATGAATGGAAAAACCGATAGGTCAGA
GGAGAACGAAGGAGGTACGAAACCTTCGGGTACAGTATCGATGTTTCAAA
AGGCACATAGACAGTTCGAAAGCGATGGATATACCTCGCCGTCCGGTGTC
AAGGGTATTCTACGCGATTCGAGCATAACCGATATAAGTCGTAGCTAGAT
CGACTGGAGCCCACGGTTGAGGGGGAGGATAGAGAGCGTGCGATTTAATT
TGGATCAGGGGCAGCGAGGGAGAGCTCCCCGTAGGAGACTCATCCATCAG
ATGACGCAGCTTTAGCAAATGAGCACTCCAGTCGAGATGATGATGAAGAT
GTGGTGTCAGCACATGATGATGAGATGATGATAGATGTGATGTATTGGAA
ATGAGACCTAATAAGAGGATGAGGA
UFO10133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9170-RC | 4399 | CG9170-RC | 425..1468 | 9..1032 | 4680 | 97.7 | Plus |
| CG9170-RA | 4263 | CG9170-RA | 425..1468 | 9..1032 | 4680 | 97.7 | Plus |
| CG9170-RB | 4191 | CG9170-RB | 353..1396 | 9..1032 | 4680 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15981004..15981673 | 942..277 | 3140 | 99 | Minus |
| X | 23542271 | X | 15982364..15982520 | 165..9 | 785 | 100 | Minus |
| X | 23542271 | X | 15981739..15981851 | 277..165 | 565 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 4460..4491 | 684..715 | 115 | 84.4 | Plus |
UFO10133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:03 Download gff for
UFO10133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9170-RA | 422..1432 | 9..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:44 Download gff for
UFO10133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9170-RB | 353..1363 | 9..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:57 Download gff for
UFO10133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9170-RB | 353..1363 | 9..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:57 Download gff for
UFO10133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15981739..15981850 | 166..277 | 100 | <- | Minus |
| X | 15982364..15982520 | 9..165 | 100 | | Minus |
| X | 15980931..15981672 | 278..1006 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:44 Download gff for
UFO10133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15874964..15875705 | 278..1006 | 97 | <- | Minus |
| arm_X | 15875772..15875883 | 166..277 | 100 | <- | Minus |
| arm_X | 15876397..15876553 | 9..165 | 100 | | Minus |
