UFO10135.5prime Sequence
1098 bp (958 high quality bases) assembled on 2011-11-01
> UFO10135.5prime
CAGTCGACATGCTGTCGCTACTCCTGGTTCTGACGACGCTTGCCAGGATC
CACGCCCACTACACGAGCGGAGATGTGGTCTATCACACAATGCCGCACTT
TTGGACGGGCGTGGGCTTCTGTCCCGCCGGACGCATTGATCACGAGGGGA
TTAGCGCCGCCCTGGGCGATCCAGCCCTTCGACTTAATCTTCGCCTGATT
GCAGCATTGCCCGTGGGCGCGGTGACCCACATTCGCATCCACTGGCTGCT
GGAGCTGATACAATTCTGGCAGTACGACCCCAGCGGAATACCGATTTATG
ATTTTTCCAAGTTCGATGACTTCATTGATTTCCTACACGAGGAACTGCGC
TTGTCCCCCGTTCTGGAGTGGATGGGCAATCTGGGTGGGGTTTTTTCGGA
AAACCCCATGCAGCAATCCTTCTACTGGGAGCACTTGGTTAAGACCACGA
TTAACCACCAGATAGCACGACACGGTTCCTCCAGATTGGTCAACTGGCGC
TATGAGACATGGAATGAACCGGACCTTCGTGGGTATAACAAGCAAAACTT
TACGGCACACACCTTTCTGGATTACGTTCAAGCTGTGCGGCGGGGTTTGA
GTAAAGCTGGAAACCTGGACAACCAGGACGGAAAGGTTCCACTGCCCATG
TATCGCTCCCTGCGCGGCCCTGCAGGACTCTTTAAGGACTCGAATCATCC
GCTCTGCTGGAATCTATTGGAGCTATGCAGTCAAAGAGTGGTTTACTGTC
CCATCGACATACTGACTTTCCACCGAAAGGGAATCGAAGGCACTGCCACG
GAAATCGTAAATGGTTCGCTTTCCTTGATGGCCCAAAATCTATGAGGAGT
ATCCCAATCTCAAGCAGCTGCCGGTGGCCCAATGATGAAGCCGATCCTGT
GGCCCGGTTGGAGCAACCTCCCCGGATTTCAGGCGATGTGCGGTATGAAT
CAACACTGATATCTACGTAATGCAGTTCTGGCATGCCAGCTTGCCGTGTC
CACTGATTCGCTGGAGTCGATTAATCATGACAACGCTCTTGACCTACATT
CCCACGAGTCACGGCACCCTTCTAGTCCACTCAGATGACGAACCAACA
UFO10135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6201-RA | 2308 | CG6201-RA | 113..1196 | 9..1081 | 4830 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11112493..11112949 | 465..9 | 2285 | 100 | Minus |
| 2L | 23513712 | 2L | 11112019..11112433 | 879..464 | 2030 | 99.8 | Minus |
| 2L | 23513712 | 2L | 11111780..11111935 | 1036..886 | 245 | 86 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:43:41 has no hits.
UFO10135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:01 Download gff for
UFO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6201-RA | 109..1217 | 1..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:28 Download gff for
UFO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6201-RA | 107..1215 | 1..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:46 Download gff for
UFO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6201-RA | 107..1215 | 1..1096 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:46 Download gff for
UFO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11112493..11112953 | 1..465 | 99 | | Minus |
| 2L | 11112014..11112431 | 466..885 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:28 Download gff for
UFO10135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11112014..11112431 | 466..885 | 99 | <- | Minus |
| arm_2L | 11112493..11112953 | 1..465 | 99 | | Minus |
