UFO10202.5prime Sequence
1078 bp (1006 high quality bases) assembled on 2011-11-10
> UFO10202.5prime
CAGTCGACATGTCTTCGGTGCTGCATCTACTGGGTTTCTTGTGGCTTCCT
TTGCTGGTTTATAGTGTATCCAATGATATGGGAGGATTGCAGAAATGTAC
AGAACTTCTAAATACACATAAGTTGGTCTACTGTTGTGGCAAATCCTTTC
TGGATAAGTTCCCCTTTGTTGGCAGCAATTGCACACCGTTTTGGGATGAC
TATGGTCCTTGCCGCTATGAATGTCTGTATAGGCACTGGGACCTCCTTGA
TCAGGATAACAAGATCAAAAAACCGGAGCTCTACCTGATGATCACCAGCC
TCTACAGCCCCTTGAATGGTTATGATAAATACGGGGCCGCTTTTAAGGCA
GCTCACGAGACTTGCGAAGCTCTGGGCTCCAGACACGCCGACTTTCTGCT
GCTCTACTCCAACCAGGTGGCGGATAAGATGGGCATGGCTTCCTCAACCT
GTCTGCCATATGCCATGCTTCATGCACAGTGTACCATGGTATACCTAACC
GCCAACTGTCCCCGTGAGAACTGGATAGATGATCCGAAGTGCAATAGTCT
GCAAAAATTGCTGTCAAGTTGCACAAAGAAATTGGACGAAAAGACGAATG
CACTTAAGGGAAAGGATGAGGAACTAACGGACAACGGGTGTGGGCATATA
GATTCAGAAGGATCCAATCTGCTCATGGCCTGTTTTCTCACACTGATGAT
CGCCAAGTTCATATCGGATCATGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCAATACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCGGACATGCAGCATCACAAACCGCATGAAGACCTTGAATC
GCCAGCCGCATCAGCACTTGTCGCCTTG
UFO10202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50b-RB | 1648 | CG30073-RB | 64..777 | 9..722 | 3570 | 100 | Plus |
| Obp50c-RC | 1648 | CG30072-RC | 64..777 | 9..722 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14371504..14372016 | 210..722 | 2565 | 100 | Plus |
| 2R | 25286936 | 2R | 14371249..14371449 | 9..209 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:44:33 has no hits.
UFO10202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:06 Download gff for
UFO10202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50c-RB | 59..782 | 4..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:05 Download gff for
UFO10202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50c-RB | 59..782 | 4..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:17 Download gff for
UFO10202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50c-RC | 59..782 | 4..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:17 Download gff for
UFO10202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14371244..14371449 | 4..209 | 99 | -> | Plus |
| 2R | 14371504..14372025 | 210..731 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:05 Download gff for
UFO10202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10258749..10258954 | 4..209 | 99 | -> | Plus |
| arm_2R | 10259009..10259530 | 210..731 | 98 | <- | Plus |
