UFO10203.5prime Sequence
1096 bp (998 high quality bases) assembled on 2011-11-10
> UFO10203.5prime
CAGTCGACATGGAAAAGAAGTCCTGGGTTGCACCGCTTACCTCGTTCACC
AACAGTAACGCAAGTAACGAAGACAGAGCCCGCAACTCGGGATCGTTAAA
CCAAGATGGGGAGCCAAGGTCCGTGCCTCACCCAACGGTTCCGGCTAAGA
AGTGCACATGTCCAACCTGCGCTTGCCAACGTAATGACCATAAATCCAAT
CCGGTACCCCCTCCCCCTCAATCACGCAAGCCTGTAGCCGAGCCGGAAAG
CCCCCATGATACAGTCAATGACGAGGACAGTTTGAAGGACTTGAGACGTT
CGACGGACCAATCCCACAAGAGCGCTCACATAGCCTTGGAGAAGAATGAG
GACTCGGGTTTTGTGATCGAGCAGGTGGTTGATACGCACAAATATTCGTC
GGATGAAGAAGAGGAGGAGGCGACGATGGGTCGCATTTTCGGAGTCTCCG
GTCCGGTGGTCAATGCCGAGGAGATGGCCGGCGCAGCCATGTACGAGCTG
GTTCGCGTCGGACACTCCCAGCTAGTTGGTGAGATCATTCGACTGGAGGG
TGATATGGCCACCATTCAGGTTTACGAGGATACTTCGGGTGTGAGCGTGG
GTGATCCCGTCTACCAGACGGGAAAGCCGCTCTCCGTTGAATTGGGACCC
GGCATCATGGGCAGCATCTTCGATGGTATCCAGCGACCATTGAGGTCCAT
CAGTGAACTAACCAACTCCATATACGTGCCCAAGGGCATCGATACGCCCT
CCCTGCCCAGGAACATTGCGTACGAATTCACACCCGGAAAATTGAAGATC
GATGCTCTGATCACCGGCGGAGACATCTACGGATCTGTTTTCGAAACAGC
ATGATGCACGATCACCGCCTGATACTACCGCCCCCGCACAAAGGGCGCAT
CCTGGTGGTTGTTGCGCCCGGGAACTACTGCGTGACGAGTGATCGTTGAG
ACGGAGTTCAACGACGAGATCACCAAGCACAACATGCTCCAGTGTGCCCG
TACGGAAGGTGTCCGTCCGGTGGAGAATAGCCTCCCACAATTCACCGTCT
TGACTGCCAGCGCGTCTGACGCCTCCTTCATGTGTCAGGGCGACCA
UFO10203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha68-3-RA | 2445 | CG5075-RA | 115..1210 | 9..1092 | 4755 | 96.6 | Plus |
| Vha68-2-RF | 2528 | CG3762-RF | 209..501 | 444..736 | 460 | 77.6 | Plus |
| Vha68-2-RE | 2474 | CG3762-RE | 155..447 | 444..736 | 460 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12978900..12979886 | 9..992 | 4470 | 97.6 | Plus |
| 2L | 23513712 | 2L | 12976121..12976405 | 452..736 | 420 | 76.5 | Plus |
| 2L | 23513712 | 2L | 13003056..13003321 | 721..456 | 385 | 76.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:44:39 has no hits.
UFO10203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:07 Download gff for
UFO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-3-RA | 115..1157 | 9..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:09 Download gff for
UFO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-3-RA | 115..1157 | 9..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:20 Download gff for
UFO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-3-RA | 115..1157 | 9..1046 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:20 Download gff for
UFO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12978900..12979942 | 9..1046 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:09 Download gff for
UFO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12978900..12979942 | 9..1046 | 97 | | Plus |
