UFO10205.5prime Sequence
1079 bp (970 high quality bases) assembled on 2011-11-10
> UFO10205.5prime
CAGTCGACATGGAGCACTTGCGACCGCTGAGCTACGAGGAGATGTGCCAA
ATGGAGCTGCTCCAGGCAGCCGGCGGATCAACGACATCCTCGGCTCCGCC
GGCCATGATGCCTATCATGGTGATACCCACAGCACTGCTGCCGGCTCCCA
TCGACGGGGCAGCGGGCGGTGGAGTTCCCGGTGGTGGTGGCATTGGTGGT
GCGGCCATGGTGGAGCACTATTATCAGCTGCAGCCCACGCACCACCTCCT
GCCAGCCGAGCCGTTACCAACGACGGCGACAGCAACAGCAACAGCAAATT
CCGGCGAATTGGCGCTCTTGCAAGGCGAACAACAGATTCCACATCCGAGC
ATACAGCATCCACAGCAAATGAATATCCTGTGCACCGGAACACTGGGACG
CCAAAGGATGCCGGCATCGGGTGGTGGCGGGCATAATCCAAACATAAATC
CCAATCCAAATCCCTCGGTGGCGGCTACTTTGCCGCGCGGTTTCCAGCCC
GCCGCCTTCGTTACGGACGTCGAGTCGGATTTCGAGGGCAGTGAATGCGG
TGCGGGCAGCATGACCACCACCTGCATTCCGCACTTTCGCTTCGGAGCGT
GCGGCCTTCAGTCCCTGCAACAGCACCACCAGCAGCAGGATGCAGTGGTG
GGCTGTGGTTCGCTGGCCTACATGATGGGCTCTGGCACCTTGGGTCGGGG
CCGTCGTCTGGCCGGCGGTCAGGGCAAACCTAAGCGGGTTTCCTTCAAGG
GCGACAACCTGCCACCGCCGTCGCCACCGCCGCCACCAGCCGTTGAGCTA
GACGAGAATGGGCTGCCCATACCGGGTGGACCGGGAGATGCGGGTAGCTG
CTCCTACATGCACTTCGACAACTACATGGACTACCAGACAACTGGTTTTC
GGTGGATTGCCGAGGTCACCGAGCACTCGAACATCCGCCGCACACTGTCC
CGCCAGACTCGATCTCGAACAGGCGAATTCCGCGGCGAGATAGCAGCATC
CAGAAGTCAAAGGTGAACTTTGGCATTCCCTCGCCGCGGCGTGTTCGTCG
GTGAAAAGAGTGTCTGACGCCAAGTTCGC
UFO10205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44837-RE | 3746 | CG44837-RE | 283..1333 | 6..1053 | 5000 | 98.9 | Plus |
| CG44837-RD | 3746 | CG44837-RD | 283..1333 | 6..1053 | 5000 | 98.9 | Plus |
| CG44837-RC | 3746 | CG44837-RC | 283..1333 | 6..1053 | 5000 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11862284..11863165 | 887..6 | 4410 | 100 | Minus |
| 3L | 28110227 | 3L | 11854708..11854879 | 1053..885 | 430 | 92.5 | Minus |
Blast to na_te.dros performed 2014-11-27 00:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2478 | 214..377 | 153 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6903 | 212..370 | 136 | 57.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3236..3312 | 220..298 | 128 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6897 | 212..296 | 125 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6867 | 222..367 | 124 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6826 | 265..368 | 115 | 60.2 | Plus |
UFO10205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:08 Download gff for
UFO10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34420-RC | 281..1333 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:20 Download gff for
UFO10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44837-RC | 281..1333 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:26 Download gff for
UFO10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44837-RC | 281..1333 | 1..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:26 Download gff for
UFO10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11862284..11863167 | 1..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:20 Download gff for
UFO10205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11855384..11856267 | 1..887 | 99 | | Minus |
