UFO10208.5prime Sequence
1087 bp (916 high quality bases) assembled on 2011-11-10
> UFO10208.5prime
CAGTCGACATGGATCGCTACGACATGGAGGACGTCGTTGTGGCGCCCCCT
GCCGAGTGCAGTTCGCCGCTCAAGGAGTGGCGCCTCAAGCGCCAGGCGGG
CACACTAGACCGCTCCGATATCATCGAGTTCTTAAAGCGCGAGTCTCCCA
AGTATTTTGATTACCAGACTAGCGCTACAGTTAAAGATACCAATGTGATT
ACTCTAAAGTGCATGTTTAAGGAGTCGCTGGCCAAGGAGGAGATCATCGA
TGTCGTTGTGGAGTTTATGCTGGGCGACAATCCTTCCTCCGCACTGGAGA
AGCTCCGACTGGAGGGCAACACGGCCACCGTCTGTGGCAAGGTCTTTAAG
AACGGGGAGCCCACCTACAGCTGCCGCGAGTGCGGCGTCGATCCCACCTG
CGTGCTTTGCGTCAACTGTTTCAAGCGCTCGGCGCATCGCTTTCACAAGT
ACAAGATGTCCACTTCCGGCGGCGGCGGCTGCTGTGACTGCGGAGACGAC
GAGGCCTGGAAGAAGGATCAGTACTGCGAGCTGCATCTGGCAAATCGCAA
GAATCCGCTGGAGAGCAAGATCCTGACCGACGCAGTACTTGAGCGGGTTG
AGATCTGCTTTGGGGCAATCCTCGCCTTCTGCGTGAGTTATCTGGAAATC
GAGCCAAACGCCAGTCTACAGTGCCTGGATGGAAACGTGGAAGGCGGCCA
AGTGGACGGAGCGCAGTATTGCACTGTGCTCTACAACGACGAGTCGCACA
CGTTCGACCAAGTCATTCAGACGCTGACCAAATTGCCAAGTGTCGGGCAA
AGGACGCCATGGAAATCGTGGCGGCAATTGATCGCGAAGGACGAGCGGTG
GTCAAATGCGATACATTTGAGGAGTGCATGAAATTAAAGTTATCCATCGA
GAACCAATGATTCTGCCGACCTCCCTTGTGTCGACGGCACCGCAACATCA
GTCCCCTCAGACTCCGTGCTGCCACATCCAGGCCGTGCCTGTCAGCAGTT
TGCCCTGCAGCTTCCGCTGTTCAGGAGTTCCTGGTGCAACCTACCTCTTC
CGGAGACGTTCTCCGAGTTGGTGCACGGCAAGCAGTA
UFO10208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9086-RC | 7096 | CG9086-RC | 360..1445 | 9..1085 | 4875 | 97.4 | Plus |
| CG9086-RB | 6241 | CG9086-RB | 218..1303 | 9..1085 | 4875 | 97.4 | Plus |
| CG9086-RA | 6383 | CG9086-RA | 360..1445 | 9..1085 | 4875 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16962931..16963266 | 540..205 | 1680 | 100 | Minus |
| X | 23542271 | X | 16962492..16962826 | 872..539 | 1610 | 99.4 | Minus |
| X | 23542271 | X | 16967495..16967672 | 186..9 | 890 | 100 | Minus |
| X | 23542271 | X | 16962207..16962434 | 1085..866 | 355 | 85.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:45:08 has no hits.
UFO10208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:09 Download gff for
UFO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 322..1415 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:29 Download gff for
UFO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 352..1445 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:35 Download gff for
UFO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9086-RA | 352..1445 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:35 Download gff for
UFO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16962932..16963266 | 205..539 | 100 | <- | Minus |
| X | 16963703..16963720 | 187..204 | 100 | <- | Minus |
| X | 16967495..16967677 | 1..186 | 97 | | Minus |
| X | 16962493..16962825 | 540..871 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:29 Download gff for
UFO10208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16856526..16856858 | 540..871 | 99 | <- | Minus |
| arm_X | 16856965..16857299 | 205..539 | 100 | <- | Minus |
| arm_X | 16857736..16857753 | 187..204 | 100 | <- | Minus |
| arm_X | 16861528..16861710 | 1..186 | 97 | | Minus |
