UFO10209.5prime Sequence
1102 bp (911 high quality bases) assembled on 2011-11-10
> UFO10209.5prime
CAGTCGACATGTCGCGTTTCTTTGCCAACGGGTCCGAATCGGAGTCCGAG
TCCAGCGAGGAGGAGATCCAAGCGACCAACTTCAACAAAGCCAGCGCCTT
CCAATTCAGCGACGATGAGGAGGAGGTCAAGCGCGTGGTCCGCTCCACGA
AGGAGAAGCGTTACGAGAACCTCACCAGCATCATCAAAACCATTCGCAAC
CACAAGAAAATCAAGGATATTCCCAATACCCTGAGCAGCTTCGAGGATCT
GACGCGCGCCTACCAGAAGGCACTGCCGGTCATCTCAAAGGAGGAGAACG
GCATTACGCCGCGATTTTACATTCGCTGCCTGGCCGAGCTGGAGGACTTC
ATCAACGAGGTGTGGGAGGATCGCGAGGGCAGGAAAAACCTTTCCAAGAA
CAACTCCAAGTCGCTGGGCACTTTGCGCCAGAAGGTACGCAAGTACATCA
AGGACTTCGAGGACGATCTGTCGCGTTTCCGTGAAGCACCCGACCAGGAG
AGCGAGGCCGAGGACGAGGTGGTTGCCCTGGAGAGCGACGGCGGCGATGC
TGGTGATGACAGCGACGCCGGAGTGAAGCCTACAGAAGCGGTTCCGAAAG
CTGTGAAGTCCGCGCCGGCAAAGGCTGCGCCCGCCGATGATGACGATTCC
GATGACTCCATTGATTGGGACTCGGACTCTGAATCGGAGACCGAGTCCTC
TGACGATGAGAACCAGTATCAGAACATGCGCGAGCGATTCTTGAAGCGTA
CTACCGAAAAGAGGAAAAGGATGATGACAAGAGGAAGGACAAGCGTAAGG
AGCAGAAGACCCAGATCCGCAAGCGCGCCGAGGACTATGAAGATGGCCGA
GTGGGAAGACTGTGTCAAGGGTCCCTGTATTACAAAACCCCAAGATGTTC
CAAAAAGGACGCAGAGATCGATGTTCCCCTAGTGCTTGCCCAGCTGTTGG
AAATTATTGTCGGCTCGCGGCAGAAGCGGCACCGATCGCGTCTGCAATCG
ATTCTGCTTTTCGAGTTGAGGGACATTCTCTTGATCACACAAACTGGGAC
CCGCCGTCTCGGAAGAATCACTTTACCATCATCTTCCGCTTACCTCGATT
AC
UFO10209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF3-S8-RB | 3275 | CG4954-RB | 175..1249 | 9..1084 | 4770 | 97 | Plus |
| eIF3-S8-RA | 3143 | CG4954-RA | 94..1168 | 9..1084 | 4770 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17666222..17667203 | 102..1084 | 3935 | 95.1 | Plus |
| 2R | 25286936 | 2R | 17666067..17666159 | 9..101 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:45:15 has no hits.
UFO10209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:10 Download gff for
UFO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S8-RA | 175..1240 | 9..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:35 Download gff for
UFO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S8-RA | 94..1159 | 9..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:40 Download gff for
UFO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF3-S8-RA | 94..1159 | 9..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:40 Download gff for
UFO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17666067..17666159 | 9..101 | 100 | -> | Plus |
| 2R | 17666222..17667194 | 102..1075 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:35 Download gff for
UFO10209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13553572..13553664 | 9..101 | 100 | -> | Plus |
| arm_2R | 13553727..13554699 | 102..1075 | 96 | | Plus |
