UFO10210.5prime Sequence
1129 bp (1002 high quality bases) assembled on 2011-11-10
> UFO10210.5prime
CAGTCGACATGTTCTATACATTTAGTTGGATTTCGAAGCATTACAAGAAA
ATGAGAAAATTCGAGTCAGCTGAGTGGGAAAATGTCACACAACTGAACTT
GGCCGAGGCGCAGGTATTTACTGGAGACGAAGGGAACCTTCAGTCTATGG
AGAAAATTTACTTGAAATTCTTTGAAAAGGATGATCTCATCAGTCGAATG
GCCTTGTTCAATCAGTTTCACCTCTACACCTGCAAGACGCCGCAATCGCC
GCAGCAATTTCTTTACCACTTTTATGTGAAGTACATCATTCAAGAACTGA
AGGCTCACGCGTTAGTAGAGTGGTCCTGGCTGTTGCTCAGGAAGTTTGGG
CGAGGGGGATCCATCGAGGAGGAGCAGGCAAGCCGGGCAGCTTACAAGCG
ACGGACAGAGGGCACACTACCGAAGATCAAAGTCCTGATGAGCCAAGCAG
ATCGCTCCGTGTGGCGCTGTGATCCCCAGGAACACCAGTCAGGGGTCACC
CATGAGGAGGTCACCCGCCTTCTGCAGGGTTACGTGGAGAATGAGGTGGA
CCTTAACAGCGATGGAGCGTGCAATCAGGAATGTGGTTACTACAAATTAG
CCAAAAACGAGGGTTGCTTCGATAATAAGTTCTGTTCCGAGCAGCCAAAA
TGTACGGGCGGAGTTCATGATTGTCGCTTTGTGGAGTCGAACATGAAGAT
TTGTCAGGCGGAAAAGAACTCTAGCAGGCGGTACGAGTTCATAAAGTACG
AAAGTGGCCTTGTTCATGGCAATGAGAAACCTTGTGCCACGTGGTTGAAC
AGTGCAAAGAGTTGGAATCGGTGGCTTTTCATGGAATGCAGCTACTGCCT
TTGCTTGTGCGATGATCAGAGTCCTCATCGGATCGGTACTTCAATCTGCG
TCCTGTGATCGCCGATGTTAAAAATAACCAGGGTCGTGGTGGGGCTCCGA
TTTGTGAAGAGGAATCGCATTTTTCACCTGCAGTCCAGAAGTGAACTTCT
GCCACTGAGACATCACGGACACTCTTCGTGAAGCCCGTGATCGTACTCAA
TTTCGACAAGATTGGTTCTGAAACGGTGGACTACATACCCCTACTTACGA
AGCGATTCAATCTGAATCTGGAGGTATCG
UFO10210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31664-RB | 1971 | CG31664-RB | 254..1360 | 9..1101 | 4955 | 97.4 | Plus |
| CG31664-RC | 2075 | CG31664-RC | 254..1363 | 9..1101 | 4915 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1825188..1825904 | 928..213 | 3535 | 99.9 | Minus |
| 2L | 23513712 | 2L | 1825987..1826193 | 215..9 | 1035 | 100 | Minus |
| 2L | 23513712 | 2L | 1825083..1825136 | 982..929 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:44:14 has no hits.
UFO10210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:04 Download gff for
UFO10210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31664-RB | 123..1159 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:53 Download gff for
UFO10210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31664-RB | 245..1281 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:05 Download gff for
UFO10210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31664-RB | 245..1281 | 1..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:05 Download gff for
UFO10210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1825029..1825133 | 932..1028 | 92 | <- | Minus |
| 2L | 1825186..1825901 | 216..931 | 99 | <- | Minus |
| 2L | 1825987..1826200 | 1..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:53 Download gff for
UFO10210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1825029..1825133 | 932..1028 | 92 | <- | Minus |
| arm_2L | 1825186..1825901 | 216..931 | 99 | <- | Minus |
| arm_2L | 1825987..1826200 | 1..215 | 98 | | Minus |
