UFO10211.5prime Sequence
1076 bp (947 high quality bases) assembled on 2011-11-10
> UFO10211.5prime
CAGTCGACATGTTTGTTCTAATATACCTGTTGATCGCGATCTCCTCGCTT
TTGGCCTACTTGTACCACCGCAACTTCAACTACTGGAATCGCCGCGGCGT
GCCACACGATGCTCCTCACCCACTGTATGGCAACATGGTCGGGTTCCGGA
AGAACCGGGTGATGCACGACTTCTTCTACGACTACTACAACAAGTACCGG
AAGAGCGGCTTTCCCTTCGTGGGCTTTTACTTTCTGCACAAGCCGGCCGC
CTTCATCGTGGACACCCAGCTGGCCAAGAACATCCTGATCAAGGATTTCT
CGAACTTTGCCGATCGTGGCCAGTTTCACAACGGGCGCGACGACCCGCTC
ACGCAGCACCTGTTCAACCTGGACGGAAAGAAGTGGAAGGACATGCGCCA
GAGGCTGACGCCGACTTTCACCTCGGGCAAGATGAAGTTCATGTTCCCGA
CGGTGATCAAGGTGTCTGAGGAGTTCGTCAAGGTGATCACGGAGCAGGTG
CCCGCCGCCCAGAACGGCGCTGTGCTCGAGATCAAGGAGCTGATGGCCAG
GTTCACCACCGATGTGATTGGCACCTGTGCCTTCGGCATTGAGTGTAACA
CGCTGCGCACCCCTGTCAGTGATTTCCGCACCATGGGACAGAAGGTGTTC
ACCGATATGCGCCACGGGAAACTGCTGACCATGTTCGTGTTCAGCTTTCC
CAAGCTGGCCAGCAGGTTGAGAATGCGCATGATGCCCGAGGACGTCCACC
AGTTCTTCATGCGCCTGGTCAACGACACGATTGCCCTCAGGGAGCGGGAG
AACTTCAAGAGGACGACTTCATGAACCTGCTGATTGAACTGAAGCAGATG
GGCGCGTCACCCTGGACAACGGAGAGTGATCGAGGGCATGGACATCGGCG
ACCTGGCCGCCCAGTGTCGTCTTTTATGTTGCCGGATTTGAGACCTCCTC
CTCGAACATGAGTTACTGCCTGTATGAGTTGCTCAAATCAGACATTCAAG
ACAGCTGGCGCAACGAGATCAACGGTGCTGAGACAGGAGGTAGCTACGTA
CGATTCATCAGCCATGACCTACTGAC
UFO10211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a2-RA | 1674 | CG9438-RA | 60..1143 | 9..1073 | 4820 | 97.3 | Plus |
| Cyp6a21-RA | 1631 | CG10247-RA | 607..666 | 536..595 | 195 | 88.3 | Plus |
| Cyp6a13-RA | 1649 | CG2397-RA | 549..601 | 546..598 | 190 | 90.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6780455..6781432 | 981..9 | 4570 | 98.8 | Minus |
| 2R | 25286936 | 2R | 14886282..14886341 | 595..536 | 195 | 88.3 | Minus |
| 2R | 25286936 | 2R | 8571047..8571099 | 546..598 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:44:20 has no hits.
UFO10211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:40:05 Download gff for
UFO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a2-RA | 18..1001 | 1..981 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:57 Download gff for
UFO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a2-RA | 54..1037 | 1..981 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:10 Download gff for
UFO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a2-RA | 54..1037 | 1..981 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:10 Download gff for
UFO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6780455..6781438 | 1..981 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:57 Download gff for
UFO10211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2667960..2668943 | 1..981 | 98 | | Minus |
